RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase [Candidatus Liberibacter asiaticus str. psy62] (401 letters) >gnl|CDD|181634 PRK09064, PRK09064, 5-aminolevulinate synthase; Validated. Length = 407 Score = 720 bits (1860), Expect = 0.0 Identities = 232/399 (58%), Positives = 305/399 (76%), Gaps = 1/399 (0%) Query: 1 MDFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGS-RKVTIWCSNDYLGMG 59 MD+E FF++ ++ L E RYR F +L +FPYA +G R+VT+WCSNDYLGMG Sbjct: 1 MDYEAFFENALDRLKAEGRYRVFADLERIAGRFPYATWRRPDGGEREVTVWCSNDYLGMG 60 Query: 60 KHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANW 119 +HPKVIE ++CG GAGGTRNI+GTN+YHV LE+ELA LHGK+AAL+F SGY++N Sbjct: 61 QHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSND 120 Query: 120 ATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPK 179 AT+ TL I + + FSD NHAS+IEGI ++RC+K I+ HND+ LE+ LAA D PK Sbjct: 121 ATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRHNDVAHLEELLAAADPDRPK 180 Query: 180 IIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRIT 239 +I FES+YSMDGDIAPI EICDLAD+YNA+TY+DEVHAVG++G G GI+ER+G+M+RI Sbjct: 181 LIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRID 240 Query: 240 IISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYD 299 II GTLAK FG GGYIA S L D +RS+A GFIF+TSLPPAIA+A++ SI+++K+ + Sbjct: 241 IIEGTLAKAFGVMGGYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNE 300 Query: 300 ERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPIN 359 ER+++ ER +L+ +L+ IP +PNESHI+P+MVGD KC + S++LL+E GIY+QPIN Sbjct: 301 ERERHQERAAKLKAALDAAGIPVMPNESHIVPVMVGDPEKCKKASDMLLEEHGIYVQPIN 360 Query: 360 YPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKMN 398 YPTV + ERLR+T TP HTD I+HLV +L VW ++ Sbjct: 361 YPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARLG 399 >gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional. Length = 406 Score = 614 bits (1585), Expect = e-176 Identities = 222/397 (55%), Positives = 299/397 (75%) Query: 1 MDFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDYLGMGK 60 M++E++F+ Q++ L E RYR F +L + FP A H+ +G R+VT+WCSNDYLGMG+ Sbjct: 1 MNYEQYFQRQLDGLRREGRYRVFADLERQAGAFPRATHHGPDGPREVTVWCSNDYLGMGQ 60 Query: 61 HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWA 120 HP V+ + CG GAGGTRNI+GTN+YHV+LE ELA LHGK+AAL+F SGY++NWA Sbjct: 61 HPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWA 120 Query: 121 TIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKI 180 + TL S++ + SD NHAS+IEGI +R +K I+ HND DLE+ L+ D PK+ Sbjct: 121 ALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRHNDPADLERKLSDLDPHRPKL 180 Query: 181 IIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITI 240 + FES+YSMDGDIAPI EICD+A+++ A+TY+DEVHAVG++G G GI+EREG+ +R+TI Sbjct: 181 VAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTI 240 Query: 241 ISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDE 300 I GTLAK FG GGYI S LCDFIRSFASGFIF+TSLPPA+A+ ++ S++++K E Sbjct: 241 IEGTLAKAFGVMGGYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAE 300 Query: 301 RKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINY 360 R+++ +RV +LR L+ IP +PN SHI+P+MVGD C QIS+ LL +GIY+QPINY Sbjct: 301 RERHQDRVARLRARLDKAGIPHLPNPSHIVPVMVGDPVLCKQISDELLDRYGIYVQPINY 360 Query: 361 PTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKM 397 PTV + ERLR+T +PLHTD+DIEHLV +L +W ++ Sbjct: 361 PTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARL 397 >gnl|CDD|162547 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. Length = 402 Score = 604 bits (1560), Expect = e-173 Identities = 223/394 (56%), Positives = 295/394 (74%) Query: 1 MDFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDYLGMGK 60 MD+++FF +I+ LH E RYR F +L + +FP+A + +G++ VT+WCSNDYLGMG+ Sbjct: 1 MDYDQFFNKEIDKLHLEGRYRVFADLERQAGEFPFAQWHRPDGAKDVTVWCSNDYLGMGQ 60 Query: 61 HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWA 120 HP+V++ T +K G GAGGTRNI+GTN HV LE ELA LHGK++AL+F SGY+AN A Sbjct: 61 HPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDA 120 Query: 121 TIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKI 180 T+ TL I + FSD NHAS+IEGI + +K I+ HND+ LEK L + D + PKI Sbjct: 121 TLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRHNDVAHLEKLLQSVDPNRPKI 180 Query: 181 IIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITI 240 I FES+YSMDGDIAPI+EICDLAD+Y A+TY+DEVHAVG++G G GI+ER+G+M+RI I Sbjct: 181 IAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDI 240 Query: 241 ISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDE 300 I GTLAK FG GGYIAAS L D IRS+A GFIF+TSLPPAIA+ + SI+++K+ D Sbjct: 241 IEGTLAKAFGVVGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDL 300 Query: 301 RKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINY 360 R+ + E VK+L++ LE IP IPN SHI+P+++GD+ C ++S++LL + GIY+QPINY Sbjct: 301 RRAHQENVKRLKNLLEALGIPVIPNPSHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINY 360 Query: 361 PTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVW 394 PTV + ERLR+T TP HTD I+ LV +L VW Sbjct: 361 PTVPRGTERLRITPTPAHTDKMIDDLVEALLLVW 394 >gnl|CDD|184023 PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional. Length = 410 Score = 561 bits (1448), Expect = e-160 Identities = 214/397 (53%), Positives = 291/397 (73%) Query: 1 MDFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDYLGMGK 60 M+++ +F + LH E RYR F +L E +FP A + +G R+VTIWCSNDYLGMG+ Sbjct: 2 MNYDSYFDAALAQLHQEGRYRVFADLEREAGRFPRARDHGPDGPRRVTIWCSNDYLGMGQ 61 Query: 61 HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWA 120 HP VI ++ G GAGGTRNI+GT++ HV+LE+ELA LHGK++AL+F SGY++N A Sbjct: 62 HPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDA 121 Query: 121 TIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKI 180 + TL + + SD+ NHAS+IEGI ++ +K ++ HNDL DLE+ LA+ D PK+ Sbjct: 122 ALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRHNDLADLEEQLASVDPDRPKL 181 Query: 181 IIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITI 240 I FES+YSMDGDIAPI+ ICDLAD+YNA+TY+DEVHAVG++G+ G GI+ER+G+M+RI + Sbjct: 182 IAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDM 241 Query: 241 ISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDE 300 I GTLAK FG GGYIAAS +L DF+RSFA GFIF+T+LPPA+A+ + +I+++K E Sbjct: 242 IQGTLAKAFGCLGGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTE 301 Query: 301 RKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINY 360 R + +RV L+ L IP +P+ SHI+P+MVGD C IS+ L+ E GIYIQPINY Sbjct: 302 RDAHQDRVAALKAKLNANGIPVMPSPSHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINY 361 Query: 361 PTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKM 397 PTV + ERLR+T TPLH D DI+ LV++L +W ++ Sbjct: 362 PTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRL 398 >gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. Length = 360 Score = 335 bits (861), Expect = 1e-92 Identities = 128/348 (36%), Positives = 210/348 (60%), Gaps = 4/348 (1%) Query: 45 RKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHG 104 R++ + SNDYLG+ HP+VI+ AQ+ E+ G G+ +R ++G + H LE+ELA G Sbjct: 16 RRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKG 75 Query: 105 KKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLE 164 +AAL+F+SGY+AN I L + D + SD+ NHAS+I+G + + + HND+E Sbjct: 76 TEAALLFSSGYLANVGVISALVGKGD--LILSDALNHASLIDGCRLSGARVRRYRHNDVE 133 Query: 165 DLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSC 224 LE+ L K+I+ + ++SMDGDIAP+ ++ LA++Y A +D+ H G+ G Sbjct: 134 HLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGED 193 Query: 225 GAGISEREGIMNRITIIS-GTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAI 283 G G E G+ I GTL+K G++G Y+A S+ L D++ + A IFST+LPPA+ Sbjct: 194 GRGTLEHFGLKPEPVDIQVGTLSKALGSYGAYVAGSQALIDYLINRARTLIFSTALPPAV 253 Query: 284 ASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQI 343 A+A++ +++ I++ R+K L + +LR LE +P+ + I+P+++GD+ + Sbjct: 254 AAAALAALELIQEEPWRREKLLALIARLRAGLEALGFTLMPSCTPIVPVIIGDNASALAL 313 Query: 344 SNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLE 391 + L ++ GI++ I PTV RLR+TL+ HT DI+ L +L+ Sbjct: 314 AEELQQQ-GIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 >gnl|CDD|180327 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed. Length = 385 Score = 327 bits (841), Expect = 3e-90 Identities = 124/345 (35%), Positives = 201/345 (58%), Gaps = 5/345 (1%) Query: 51 CSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALI 110 SNDYLG+ +HP++I AQ+ + G G+GG+R + G + H LE+ELA G + AL+ Sbjct: 45 ASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAERALL 104 Query: 111 FNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNL 170 F+SGY AN A + L + D + SD NHAS+I+G +R + + HND++ LE L Sbjct: 105 FSSGYAANLAVLTALAGKGD--LIVSDKLNHASLIDGARLSRARVRRYPHNDVDALEALL 162 Query: 171 AATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISE 230 A +I+ ES++SMDGD+AP+ E+ LA ++ A +DE H G+ G G G++ Sbjct: 163 AKWRAG-RALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAA 221 Query: 231 REGIMNRITIIS-GTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVT 289 G+ +I GTL K G+ G + SE L D++ + A FIF+T+LPPA A+A+ Sbjct: 222 EAGLAGEPDVILVGTLGKALGSSGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARA 281 Query: 290 SIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLK 349 +++ +++ + R++ + +LR L + ++S I P++VGD+ + ++ L+ Sbjct: 282 ALRILRREPERRERLAALIARLRAGLRALGFQLMDSQSAIQPLIVGDNERALALAA-ALQ 340 Query: 350 EFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVW 394 E G ++ I PTV RLR+TLT HT++DI+ L+ +L Sbjct: 341 EQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL 385 >gnl|CDD|180765 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional. Length = 397 Score = 306 bits (786), Expect = 7e-84 Identities = 125/360 (34%), Positives = 207/360 (57%), Gaps = 6/360 (1%) Query: 42 EGSRKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELAT 101 ++V +C+N+YLG+ HP++I A+ + G G R I GT H LE++LA Sbjct: 39 ADGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAK 98 Query: 102 LHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHN 161 G + A++++S + AN TL + D II SD+ NHASII+G+ + K+ + +N Sbjct: 99 FLGTEDAILYSSCFDANGGLFETLLGKEDAII--SDALNHASIIDGVRLCKAKRYRYANN 156 Query: 162 DLEDLEKNLAATDLSIP--KIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVG 219 D+ DLE L + K+I + ++SMDGDIAP+ EICDLAD+Y+A+ +D+ HAVG Sbjct: 157 DMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVG 216 Query: 220 IHGSCGAGISEREGIMNRITIISGTLAKGF-GTFGGYIAASENLCDFIRSFASGFIFSTS 278 G G G E G+M+R+ II+GTL K G GGY A + + D++R + ++FS S Sbjct: 217 FVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGRKEVIDWLRQRSRPYLFSNS 276 Query: 279 LPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSH 338 L PAI +AS+ ++ +++ + R + E + R + P E IIP+M+GD+ Sbjct: 277 LAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAAGFTLGPGEHPIIPVMLGDAK 336 Query: 339 KCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKMN 398 + ++ LL+E G+Y+ ++P V K + R+R ++ HT ++ + + E V +++ Sbjct: 337 LAQEFADRLLEE-GVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKELG 395 >gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. Length = 385 Score = 272 bits (696), Expect = 1e-73 Identities = 117/353 (33%), Positives = 200/353 (56%), Gaps = 3/353 (0%) Query: 45 RKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHG 104 ++V SN+YLG HP++ E A + ++ G+GAG R IAGT H LE++LA Sbjct: 33 KEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKK 92 Query: 105 KKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLE 164 +AAL+F SG+ N + L + D ++ SD NHASII+G+ + K I+ H D++ Sbjct: 93 TEAALVFQSGFNTNQGVLSALLRKGDIVL--SDELNHASIIDGLRLTKATKKIYKHADMD 150 Query: 165 DLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSC 224 DL++ L K+I+ + ++SMDGD+AP+ EI +LA++Y A+TY+D+ H G+ G Sbjct: 151 DLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEA 210 Query: 225 GAGISEREGIMNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIA 284 G G G+ +++ I GTL+K G GGY A + L +++++ A F+FST+ PPA+ Sbjct: 211 GRGTVHHFGLEDKVDIQVGTLSKAIGVVGGYAAGHKELIEYLKNRARPFLFSTAQPPAVV 270 Query: 285 SASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQIS 344 +A ++ +++ + ++ + + + L +E+ I P+++GD + S Sbjct: 271 AALAAAVDELQRSPELMERLWDNTRFFKAGLGKLGYDTGGSETPITPVVIGDEKAAQEFS 330 Query: 345 NILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKM 397 L E GI+ Q I +PTV + R+R T HT D++ + + E V +++ Sbjct: 331 RRLFDE-GIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKEL 382 >gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. Length = 393 Score = 255 bits (652), Expect = 2e-68 Identities = 120/352 (34%), Positives = 194/352 (55%), Gaps = 6/352 (1%) Query: 45 RKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHG 104 R+V +C+N+YLG+ HP +I+ A+ ++ G G R I GT H LE ++A G Sbjct: 38 REVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLG 97 Query: 105 KKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLE 164 + +++ S + AN TL D II SD+ NHASII+G+ + K+ + +ND+ Sbjct: 98 TEDTILYASCFDANGGLFETLLGAEDAII--SDALNHASIIDGVRLCKAKRYRYANNDMA 155 Query: 165 DLEKNLAATDLSIPK--IIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHG 222 DLE L + + +I + ++SMDG IAP+ EICDLAD+Y+A+ +DE HA G G Sbjct: 156 DLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLG 215 Query: 223 SCGAGISEREGIMNRITIISGTLAKGF-GTFGGYIAASENLCDFIRSFASGFIFSTSLPP 281 G G E G+M R+ II+GTL K G GG+ A + + + +R + ++FS SLPP Sbjct: 216 PTGRGSHELCGVMGRVDIITGTLGKALGGASGGFTTARKEVVELLRQRSRPYLFSNSLPP 275 Query: 282 AIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCT 341 A+ AS+ ++ ++ + R + + R +E P + IIP+M+ D+ Sbjct: 276 AVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAAGFDIKPADHPIIPVMLYDAVLAQ 335 Query: 342 QISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENV 393 + + LL+E GIY+ YP V K + R+RV ++ HT+ ++ V + + Sbjct: 336 RFARRLLEE-GIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRI 386 >gnl|CDD|178541 PLN02955, PLN02955, 8-amino-7-oxononanoate synthase. Length = 476 Score = 201 bits (511), Expect = 3e-52 Identities = 117/365 (32%), Positives = 194/365 (53%), Gaps = 24/365 (6%) Query: 44 SRKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLH 103 +K+ ++ NDYLG+ HP + A ++ G+G G+ I G YH +LE LA L Sbjct: 101 FKKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK 160 Query: 104 GKKAALIFNSGYIANWA---TIGTLCSQI---------DNIICFSDSHNHASIIEGINKA 151 K+ L+ +G+ AN A IG++ S + + + FSD+ NHASII+G+ A Sbjct: 161 KKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLA 220 Query: 152 R----CKKVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYN 207 + ++ H D+ L L++ + K+++ +S++SMDGD AP++E+ L +Y Sbjct: 221 ERQGNVEVFVYRHCDMYHLNSLLSSCKMK-RKVVVTDSLFSMDGDFAPMEELSQLRKKYG 279 Query: 208 AITYIDEVHAVGIHGSCGAGISEREGIMNRITIISGTLAKGFGTFGGYIAASENLCDFIR 267 + ID+ H + G G G++E + + GTL+K G GG+IA S+ I+ Sbjct: 280 FLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHGGFIACSKKWKQLIQ 339 Query: 268 SFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNES 327 S FIFST++P +A+A+ ++ ++ RK ERVK+ + A+ + S Sbjct: 340 SRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFK------ALSGVDISS 393 Query: 328 HIIPIMVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLV 387 II ++VG+ K + S LLK G ++ I PTV RLRVTL+ HT D++ L+ Sbjct: 394 PIISLVVGNQEKALKASRYLLKS-GFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLI 452 Query: 388 SSLEN 392 ++L + Sbjct: 453 TALSS 457 >gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase. Length = 489 Score = 171 bits (436), Expect = 2e-43 Identities = 101/355 (28%), Positives = 166/355 (46%), Gaps = 29/355 (8%) Query: 52 SNDYLGMGKH-----PKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKK 106 S +YLG P+VIE + +K +R GT H LE+ +A GK Sbjct: 107 SYNYLGFAAADEYCTPRVIE----SLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKP 162 Query: 107 AALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDL 166 AA++F GY N I L + II SDS NH SI+ G + ++ HN L Sbjct: 163 AAIVFGMGYATNSTIIPALIGKGGLII--SDSLNHNSIVNGARGSGATIRVFQHNTPSHL 220 Query: 167 EKNL--------AATDLSIPKII-IFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHA 217 E+ L T KII I E IYSM+G++ + EI + +Y A Y+DE H+ Sbjct: 221 EEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHS 280 Query: 218 VGIHGSCGAGISEREGIMNR-ITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFS 276 +G G G G+ E G+ + I+ GT K FG+ GGYIA S+ L +++ +++ Sbjct: 281 IGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKRTCPAHLYA 340 Query: 277 TSLPPAIASASVTSIQYI--KQHYDERKKYLERVKQ----LRHSLENKAIPCI-PNESHI 329 TS+ P +++I+ I + + + L ++++ R L+ + N+S + Sbjct: 341 TSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMGFEVLGDNDSPV 400 Query: 330 IPIMVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIE 384 +PIM+ + K S LK+ + + + +P R R+ ++ H+ D+ Sbjct: 401 MPIMLYNPAKIPAFSRECLKQ-NVAVVVVGFPATPLLLARARICISASHSREDLI 454 >gnl|CDD|178417 PLN02822, PLN02822, serine palmitoyltransferase. Length = 481 Score = 171 bits (435), Expect = 3e-43 Identities = 107/381 (28%), Positives = 180/381 (47%), Gaps = 29/381 (7%) Query: 34 PYAIHNSDEGSRKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHV 93 P+ I N + V + S +YLG+ + K+ E+ EK G+G+ G R GT H+ Sbjct: 102 PHTIING----KDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHL 157 Query: 94 MLEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARC 153 E ++A G +++++ G ++ I C + D I+ D H I G+ +R Sbjct: 158 DCETKIAKFLGTPDSILYSYGLSTIFSVIPAFCKKGDIIVA--DEGVHWGIQNGLYLSRS 215 Query: 154 KKVIWNHNDLEDLEKNLAATDL------SIPKIIIFESIYSMDGDIAPIKEICDLADQYN 207 V + HND+E L L + + I+ E+IY G IAP+ EI L ++Y Sbjct: 216 TIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYR 275 Query: 208 AITYIDEVHAVGIHGSCGAGISEREGI-MNRITIISGTLAKGFGTFGGYIAASENLCDFI 266 +DE ++ G+ G G G+SE G+ + +I II+ + T GG+ S + D Sbjct: 276 FRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEGGFCTGSARVVDHQ 335 Query: 267 RSFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNE 326 R +SG++FS SLPP +ASA++T+I ++ + K E + L L + IP + Sbjct: 336 RLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSD--IPGLSIG 393 Query: 327 SHII-PI-----------MVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKK--ERLRV 372 S+ + PI D I++ +LKE + + T+ K + +R+ Sbjct: 394 SNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRL 453 Query: 373 TLTPLHTDSDIEHLVSSLENV 393 ++ HT+SDI SL+ V Sbjct: 454 FVSAGHTESDILKASESLKRV 474 >gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional. Length = 407 Score = 164 bits (417), Expect = 4e-41 Identities = 94/341 (27%), Positives = 160/341 (46%), Gaps = 9/341 (2%) Query: 52 SNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIF 111 SNDYL + HP +I+ ++ G + + EK+LA G ++ L+ Sbjct: 61 SNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFESCLLC 120 Query: 112 NSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLA 171 SG+ AN + T+ N + D H S+ EG+ A + + HND++ L + + Sbjct: 121 QSGWAANVGLLQTIADP--NTPVYIDFFAHMSLWEGVRAAGAQAHPFRHNDVDHLRRQIE 178 Query: 172 ATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISER 231 P II+ +S+YS G IAP+ +I D+A+++ + +DE H++G HG GAG+ Sbjct: 179 RHG---PGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAE 235 Query: 232 EGIMNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIF-STSLPPAIASASVTS 290 G+ +R+ I+ +LAK F G I L +++ + IF ST LP IA T Sbjct: 236 LGLTSRVHFITASLAKAFAGRAGIITCPRELAEYVPFVSYPAIFSSTLLPHEIAGLEAT- 294 Query: 291 IQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKE 350 ++ I+ D R + + LR L I +ES II + G T++ L+E Sbjct: 295 LEVIESADDRRARLHANARFLREGLSELGYN-IRSESQIIALETGSERN-TEVLRDALEE 352 Query: 351 FGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLE 391 ++ P K + +R++L T SD++ ++ Sbjct: 353 RNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCR 393 >gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional. Length = 402 Score = 156 bits (397), Expect = 9e-39 Identities = 107/378 (28%), Positives = 169/378 (44%), Gaps = 38/378 (10%) Query: 36 AIHNSDEGSRKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRN--IAGTNYYHV 93 I + + S YLG+ HP +IE A + G+ + + T Sbjct: 37 GILITLADGHTFVNFVSCSYLGLDTHPAIIEGAVD-----ALKRTGSLHLSSSRTRVRSQ 91 Query: 94 ML---EKELATLHGKKAALIFNSGYIANWATIGTLCSQI----DNIICFSDSHNHAS--I 144 +L E+ L+ L G + L F S A+ + L S D + HAS I Sbjct: 92 ILKDLEEALSELFGA-SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNI 150 Query: 145 IEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLAD 204 ++GI + +HNDL+ LE ++ T+ ++ + + +YSM G IAP+KE+ L + Sbjct: 151 LKGICADETEVETIDHNDLDALE-DICKTNKTV--AYVADGVYSM-GGIAPVKELLRLQE 206 Query: 205 QYNAITYIDEVHAVGIHGSCGAG--ISEREGIMNRITIISGTLAKGFGTFGGYIA-ASEN 261 +Y YID+ H + I+G G G SE + +N TII+ +L K FG GG I Sbjct: 207 KYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASGGVIMLGDAE 266 Query: 262 LCDFIRSFASGFIFSTSLPPAIASASVTSIQ-YIKQHYDERKKYLERVKQLRHSLENKAI 320 + I +A FS SL A A + S + ++ + D+ ++ L+ L SL Sbjct: 267 QIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSL----- 321 Query: 321 PCIPNE-----SHIIPIMVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLT 375 IP E I I +GD + + LL G Y P+ +P VAK + LR+ Sbjct: 322 --IPTEQSGSFLPIRLIYIGDEDTAIKAAKQLLDR-GFYTSPVFFPVVAKGRAGLRIMFR 378 Query: 376 PLHTDSDIEHLVSSLENV 393 HT+ +I+ L S L+ + Sbjct: 379 ASHTNDEIKRLCSLLKEI 396 >gnl|CDD|178766 PLN03227, PLN03227, serine palmitoyltransferase-like protein; Provisional. Length = 392 Score = 141 bits (357), Expect = 3e-34 Identities = 87/385 (22%), Positives = 163/385 (42%), Gaps = 38/385 (9%) Query: 52 SNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIF 111 ++D+L P + + A + G G+ G R GT H+ LE+ +A G ++A+++ Sbjct: 5 THDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILY 64 Query: 112 NSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLA 171 + G +T+ + D ++ D + +++ G++ +R + HND++DL + L Sbjct: 65 SDGASTTSSTVAAFAKRGDLLV--VDRGVNEALLVGVSLSRANVRWFRHNDMKDLRRVLE 122 Query: 172 ---ATDLSIP-------KIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIH 221 A D+++ + ++ E +Y G +AP+KE+ L ++++ +DE + G Sbjct: 123 QVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTL 182 Query: 222 GSCGAGISEREGI--MNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSL 279 G G G E G+ M I++ +L FG+ GG SE + D R SG+ FS S Sbjct: 183 GKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVGGMTVGSEEVVDHQRLSGSGYCFSASA 242 Query: 280 PPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIP-CIPNE----------SH 328 PP +A A T+ + + + L +L N + P + S Sbjct: 243 PPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISP 302 Query: 329 IIPIMVGDSHKCTQI-SNILLKE---------FGIYIQPINYPTV--AKKKERLRVTLTP 376 II + + D + ++L + + + LRV Sbjct: 303 IIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANA 362 Query: 377 LHTDSDIEHLVSSL-ENVWQKMNRY 400 HT DI+ L++ L E V + + Sbjct: 363 SHTREDIDKLLTVLGEAVEAILCKI 387 >gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional. Length = 370 Score = 114 bits (288), Expect = 3e-26 Identities = 98/355 (27%), Positives = 161/355 (45%), Gaps = 25/355 (7%) Query: 52 SNDYLGMGKHPKVIENAQR-------TFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHG 104 +ND+LG + ++ ++ F +G GG+R I G + LE ++A HG Sbjct: 11 TNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHG 70 Query: 105 KKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLE 164 A I SGY+AN L S D D H S++ ++ + HNDL+ Sbjct: 71 APEAFIVPSGYMANLGLCAHLSSVTD--YVLWDEQVHISVVYSLSVISGWHQSFRHNDLD 128 Query: 165 DLEKNLAA-TDLSIPKIIIFE-SIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHG 222 LE L + S +I IF S+YS G +AP+++I L+ +Y+A +DE HA+GI G Sbjct: 129 HLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFG 188 Query: 223 SCGAGISEREGIMNRITIISGTLAKGFGTFGGYI-AASENLCDFIRSFASGFIFSTSLPP 281 G G G N ++ T +K G+ G + ++SE D + + + +ST LPP Sbjct: 189 DDGKGFCHSLGYENFYAVLV-TYSKALGSMGAALLSSSEVKQDLMLN-SPPLRYSTGLPP 246 Query: 282 AIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCT 341 + + + ++ Q + +K L R+K+ + A P + PI + Sbjct: 247 HLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSAAPGC-----VQPIFL--PGISE 299 Query: 342 QISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQK 396 Q L E GI + + +P LRV L +T+ +++ LVS L +K Sbjct: 300 QELYSKLVETGIRVGVVCFP----TGPFLRVNLHAFNTEDEVDILVSVLATYLEK 350 >gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional. Length = 403 Score = 41.3 bits (97), Expect = 5e-04 Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 27/172 (15%) Query: 62 PKVIENAQRTFEKCGIGAG---GTRNIAGTNYYHV------MLEKELATLHGKKAALIFN 112 P V A F GA G G Y + +LE+ +A+L G +AA+ Sbjct: 30 PPVYLTATFAFPTAEYGAECFAGEE--EGHFYSRISNPTLALLEQRMASLEGGEAAVALA 87 Query: 113 SGYIANWATIGTLCSQIDNII-------CFSDSHNHASIIEGINKARCKKVIWNHNDLED 165 SG A AT+ TL D +I C A + G+ + V H DL D Sbjct: 88 SGMGAITATLWTLLRPGDEVIVDQTLYGC-----TFAFLHHGLGEF---GVTVRHVDLTD 139 Query: 166 LEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHA 217 L A +++ FE+ + + + I + ++A A +D + Sbjct: 140 PA-ALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYC 190 >gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. Length = 418 Score = 36.6 bits (85), Expect = 0.011 Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 41/186 (22%) Query: 36 AIH-----NSDEGSRKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNY 90 +H + GSR V I+ + Y V ++ + G+ G NI Y Sbjct: 6 QLHAGQEPDPTTGSRAVPIYQTTSY--------VFDSTEHAAALFGLQEAG--NI----Y 51 Query: 91 YHVM------LEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIIC----FSDSHN 140 +M LE+ +A L G AAL SG A I L DNI+ + ++N Sbjct: 52 SRLMNPTTDVLEQRIAALEGGVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYN 111 Query: 141 ---HASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIK 197 H GI + R + +D E+ EK A D + K + E+I + ++ I+ Sbjct: 112 LFKHTLKRLGI-EVR----FVDPDDPEEFEK---AIDENT-KAVFAETIGNPAINVPDIE 162 Query: 198 EICDLA 203 I ++A Sbjct: 163 AIAEVA 168 >gnl|CDD|132344 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. Length = 355 Score = 36.2 bits (84), Expect = 0.014 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 10/131 (7%) Query: 99 LATLHGKKAA-LIFNSGYIANWATIGTLCSQIDNIICFSD---SHNHASIIE--GINKAR 152 LA L+ SG A ATIG+L + ++ + A I E GI Sbjct: 43 LAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGERLAKICEYLGIPHTD 102 Query: 153 CKKVIWNHNDLEDLEKNLAA-TDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITY 211 + DL +E+ LAA D++ + E+ + + P++ I +A + A+ Sbjct: 103 LNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGI---LNPLEAIAKVARSHGAVLI 159 Query: 212 IDEVHAVGIHG 222 +D + + G Sbjct: 160 VDAMSSFGAIP 170 >gnl|CDD|178323 PLN02721, PLN02721, threonine aldolase. Length = 353 Score = 36.2 bits (84), Expect = 0.014 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 95 LEKELATLHGKKAALIFNSGYIANWATIGTLCS-QIDNIICFSDSHNH 141 LE+E+A + GK+AAL SG + N ++ C + +I +SH H Sbjct: 45 LEEEMAKIFGKEAALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIH 92 >gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional. Length = 408 Score = 34.9 bits (80), Expect = 0.040 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 26/105 (24%) Query: 161 NDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAP-----IKEICDLADQYNAITYIDEV 215 ND+E LE +A D++ ++ E I +G + P + + L DQ++A+ +DE+ Sbjct: 174 NDVEALEAAMAGGDVAA---VMLEPIQG-EGGVMPAAPGFLARVRALCDQHDALLVLDEI 229 Query: 216 HAVGIHGSCGAGISEREGIM-----NRITIISGTLAKGFGTFGGY 255 CG G R G + ++T TLAK G GG+ Sbjct: 230 Q-------CGMG---RTGTLFAHWQEQVTPDIVTLAKALG--GGF 262 >gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine aminocarboxypropyltransferase; Validated. Length = 425 Score = 34.9 bits (80), Expect = 0.041 Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 22/146 (15%) Query: 85 IAGTNYYHVM------LEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIIC---- 134 + G Y +M LE+ +A L G AL SG A I T+ DNI+ Sbjct: 47 VPGNIYTRIMNPTNDVLEQRVAALEGGVGALAVASGMAAITYAIQTIAEAGDNIVSVAKL 106 Query: 135 FSDSHN---HASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDG 191 + ++N H GI + R H+D+ LE A D K + ESI + G Sbjct: 107 YGGTYNLLAHTLPRIGI-ETR----FAAHDDIAALE---ALID-ERTKAVFCESIGNPAG 157 Query: 192 DIAPIKEICDLADQYNAITYIDEVHA 217 +I I+ + D A ++ +D A Sbjct: 158 NIIDIQALADAAHRHGVPLIVDNTVA 183 >gnl|CDD|162223 TIGR01141, hisC, histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. Length = 346 Score = 33.8 bits (78), Expect = 0.077 Identities = 58/282 (20%), Positives = 114/282 (40%), Gaps = 39/282 (13%) Query: 124 TLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKIIIF 183 D ++ +++ I I+ A KV + + DLE L A D PK++ Sbjct: 90 AFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDEDGQLDLEDILVAID-DKPKLVFL 148 Query: 184 ESIYSMDGDIAPIKEICDLADQ--YNAITYIDE--VHAVGIHGSCGAGISEREGIMNRIT 239 S + G++ +I + ++ +A+ +DE G + ++E + Sbjct: 149 CSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLP-LLAEYPNL----- 202 Query: 240 IISGTLAKGFGTFG---GYIAASENLCDFI-RSFASGFIFSTSLPPAIASASVTSIQYIK 295 I+ TL+K FG G GY A+ + D + + A F+ S A +I + Sbjct: 203 IVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRAP---FNLSRL-----AQAAAIAAL- 253 Query: 296 QHYDERKKYLERVKQLRHSLEN--KAIPC---IPNESHIIPIMV-GDSHKCTQISNILLK 349 + D +K +E + R L + K +P P++++ + I D+ + L Sbjct: 254 RDDDFIEKTVEEINAERERLYDGLKKLPGLEVYPSDANFVLIRFPRDADALFE----ALL 309 Query: 350 EFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLE 391 E GI ++ +N LR+T+ T + + +++L Sbjct: 310 EKGIIVRDLNSYP--GLPNCLRITVG---TREENDRFLAALR 346 >gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. Length = 391 Score = 33.3 bits (76), Expect = 0.10 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 13/82 (15%) Query: 62 PKVIENAQRTFEKCGIGAGGTRNIAGTNYYHV----------MLEKELATLHGKKAALIF 111 P + + + F+ C GG R AG ++ LE +A L G +AA+ Sbjct: 24 PPIYQTSTFVFDSCE--QGGNR-FAGQESGYIYSRLGNPTVSNLEGRIAFLEGTEAAVAT 80 Query: 112 NSGYIANWATIGTLCSQIDNII 133 +SG A AT+ T+ D++I Sbjct: 81 SSGMGAIAATLLTILKAGDHLI 102 >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated. Length = 378 Score = 33.2 bits (76), Expect = 0.11 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 13/134 (9%) Query: 196 IKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITIISGTLAKGFGTFG-- 253 ++EI + ++++ I DE++A + + +G+ R +ISG +KGF G Sbjct: 176 LEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISG-FSKGFAMTGWR 234 Query: 254 -GYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDE----RKKYLERV 308 G+IAA + + I S+ A A +++ ++ D+ R Y +R Sbjct: 235 LGFIAAPVYFSEAMLK-----IHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRR 289 Query: 309 KQLRHSLENKAIPC 322 S + C Sbjct: 290 NFFVTSFNEIGLTC 303 >gnl|CDD|182269 PRK10150, PRK10150, beta-D-glucuronidase; Provisional. Length = 604 Score = 33.1 bits (76), Expect = 0.13 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Query: 198 EICDLADQYNAITYIDEVHAVGIHGSCGAGIS 229 E+ DLAD++ I IDE AVG++ S GAG+ Sbjct: 340 EMLDLADRH-GIVVIDETPAVGLNLSFGAGLE 370 >gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional. Length = 386 Score = 32.1 bits (73), Expect = 0.24 Identities = 16/41 (39%), Positives = 22/41 (53%) Query: 94 MLEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIIC 134 + E+ +A L G + AL F SG A AT+ D+IIC Sbjct: 65 LFEERMAVLEGGEEALAFGSGMAAISATLIGFLKAGDHIIC 105 >gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. Length = 403 Score = 31.5 bits (72), Expect = 0.39 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Query: 162 DLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAV 218 DL+DLEK L K++ + ++ G + P++EI LA Q A +D AV Sbjct: 148 DLDDLEKLLTEK----TKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAV 200 >gnl|CDD|163338 TIGR03588, PseC, UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. Length = 380 Score = 31.1 bits (71), Expect = 0.48 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 7/60 (11%) Query: 162 DLEDLEKNLAATDLSIPKIIIFESIYSMD--GDIAPIKEICDLADQYNAITYIDEVHAVG 219 D + LEK LAA +PK I+ +D G ++ I LA ++ D HA+G Sbjct: 106 DEDALEKKLAAAKGKLPKAIV-----PVDFAGKSVDMQAIAALAKKHGLKIIEDASHALG 160 >gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. Length = 379 Score = 31.0 bits (71), Expect = 0.49 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%) Query: 162 DLEDLEKNLAATDLSIPKIIIFESIYSMD--GDIAPIKEICDLADQYNAITYIDEVHAVG 219 DLE+L + + +++ + G I PI+EI ++A + A+ + D V AVG Sbjct: 125 DLEELRAAIT------DDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVG 178 >gnl|CDD|182527 PRK10534, PRK10534, L-threonine aldolase; Provisional. Length = 333 Score = 30.9 bits (70), Expect = 0.55 Identities = 15/47 (31%), Positives = 24/47 (51%) Query: 95 LEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNH 141 L+ A L GK+AAL +G AN + + C + + I +HN+ Sbjct: 39 LQDYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQAAHNY 85 >gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional. Length = 389 Score = 30.8 bits (70), Expect = 0.60 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 3/120 (2%) Query: 94 MLEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARC 153 E+ LA L G + A F SG A +T+ + D I+ + A + R Sbjct: 67 AFEEMLAKLEGAEDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRM 126 Query: 154 KKVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYID 213 V ++ D D E A L K++ ES S ++ + + LA ++ +T ID Sbjct: 127 -GVEVDYVDGRDEEAVAKA--LPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMID 183 >gnl|CDD|185305 PRK15407, PRK15407, lipopolysaccharide biosynthesis protein RfbH; Provisional. Length = 438 Score = 29.5 bits (67), Expect = 1.6 Identities = 14/37 (37%), Positives = 19/37 (51%) Query: 91 YHVMLEKELATLHGKKAALIFNSGYIANWATIGTLCS 127 ++ EK+LA G + AL+ NSG AN L S Sbjct: 64 FNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTS 100 >gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated. Length = 390 Score = 29.2 bits (66), Expect = 1.8 Identities = 12/41 (29%), Positives = 20/41 (48%) Query: 94 MLEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIIC 134 M ++ LA L G +A + SG A A + L D+++ Sbjct: 65 MFQERLAALEGAEACVATASGMAAILAVVMALLQAGDHVVS 105 >gnl|CDD|181129 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional. Length = 388 Score = 29.2 bits (66), Expect = 1.8 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 68 AQRTFEKCGIGA--GGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWATIGTL 125 A TF + G+G GG N LE++LA L G F+SG A + + Sbjct: 37 ASSTFAQDGVGGLRGGYEYARTGNPTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAV 96 Query: 126 CSQIDNII 133 D+I+ Sbjct: 97 LRPGDHIV 104 >gnl|CDD|162859 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. Length = 633 Score = 29.3 bits (66), Expect = 1.9 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 13/56 (23%) Query: 202 LADQYNAITYIDEV-----HAVG-IHGSCGAGIS--EREGIMN----RITIISGTL 245 LA+ + I YIDEV H V + + G++ EREG+ R +I GT+ Sbjct: 122 LAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLI-GTM 176 >gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional. Length = 459 Score = 29.3 bits (66), Expect = 2.0 Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 21/141 (14%) Query: 162 DLEDLEKNLAATDLSIPKI--IIFESIYSMDGDIAP----IKEICDLADQYNAITYIDEV 215 ++E + L+ + + +I E I G I P + + L D++ A+ +DEV Sbjct: 214 NIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEV 273 Query: 216 H-AVGIHGSCGAGISEREGIMNRITIISGTLAKGFGTFGGYIAASENLCD---FIRSFAS 271 +G G A E E + I LAK G GG + + F F + Sbjct: 274 QTGMGRTGKMFA--CEHENVQPDIL----CLAKALG--GGVMPIGATIATEEVFSVLFDN 325 Query: 272 GFIFSTSL---PPAIASASVT 289 F+ +T+ P A A+A T Sbjct: 326 PFLHTTTFGGNPLACAAALAT 346 >gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. Length = 376 Score = 29.3 bits (66), Expect = 2.1 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Query: 162 DLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGI 220 E +++ + + K+I+ ++ G I PI+EI +LA + +D G+ Sbjct: 126 SPERIKRAIK----TNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGV 180 >gnl|CDD|180248 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional. Length = 441 Score = 29.1 bits (66), Expect = 2.2 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 13/69 (18%) Query: 60 KHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYH---VMLEKELATL---HGKKAALIFNS 113 HPKV++ + EK + + T++Y+ V L + L + +K NS Sbjct: 71 AHPKVVKAVKEQAEKFL-------HYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNS 123 Query: 114 GYIANWATI 122 G +N A I Sbjct: 124 GTESNEAAI 132 >gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. Length = 382 Score = 28.7 bits (64), Expect = 2.5 Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 191 GDIAPIKEICDLADQYNAITYIDEVHAVG 219 G I PIKEI ++ + + + D V A+G Sbjct: 154 GMIFPIKEIGEICKERGVLFHTDAVQAIG 182 >gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine aminocarboxypropyltransferase; Validated. Length = 427 Score = 28.9 bits (65), Expect = 2.6 Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 18/124 (14%) Query: 88 TNYYHVMLEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFS-------DSHN 140 TN + +LE+ +A L G AAL SG+ A + TL D I + Sbjct: 61 TNPTNAVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFG 120 Query: 141 HASIIEGINKARCKKVIW-NHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEI 199 HA K+ +V W + +D E+ A T + K I ESI + G + I I Sbjct: 121 HAF------KSFGWQVRWADADDPASFER--AITPRT--KAIFIESIANPGGTVTDIAAI 170 Query: 200 CDLA 203 ++A Sbjct: 171 AEVA 174 >gnl|CDD|181481 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional. Length = 385 Score = 28.5 bits (64), Expect = 3.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Query: 95 LEKELATLHGKKAALIFNSGYIA 117 LE+ LA L G AL FNSG A Sbjct: 58 LEEALAKLEGGVDALAFNSGMAA 80 >gnl|CDD|179960 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated. Length = 618 Score = 28.5 bits (65), Expect = 3.3 Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 27/63 (42%) Query: 275 FSTSLPPAIASASVTSIQYIKQHYDERKKYLERVK----------------QLRHSLENK 318 STSLP + + SI LE + QL+ +LE K Sbjct: 309 ISTSLPEDVQLEMLRSI-----------PGLENAEILRPGYAIEYDYVDPRQLKPTLETK 357 Query: 319 AIP 321 I Sbjct: 358 KIK 360 >gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). Length = 431 Score = 28.1 bits (63), Expect = 3.6 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 6/42 (14%) Query: 180 IIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIH 221 + I + Y G+ +K + D D+YNA T D + IH Sbjct: 191 VCILGTTY--TGEYEDVKALNDALDEYNAKTGWD----IPIH 226 >gnl|CDD|178765 PLN03226, PLN03226, serine hydroxymethyltransferase; Provisional. Length = 475 Score = 28.4 bits (64), Expect = 3.8 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%) Query: 162 DLEDLEKNLAATDLSIPKIIIF-ESIYSMDGDIAPIKEICD 201 D + LEK A PK+II S Y D D A +++I D Sbjct: 171 DYDKLEKK--AMLFR-PKLIIAGASAYPRDWDYARMRKIAD 208 >gnl|CDD|185605 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional. Length = 995 Score = 28.1 bits (63), Expect = 4.0 Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 23/133 (17%) Query: 266 IRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPN 325 IRS + + +P Y+ E + +E + L +L I + Sbjct: 844 IRSLIA----TLGIPN-----KTKPDCYVTAKDAELIELIESAENLISTLAK-----IGS 889 Query: 326 ESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEH 385 S I PI +++ + IY+ + + K+ +L + + Sbjct: 890 VSVIPPIEEEAEVPKGCGFDVVDNKVIIYLNLDEFIDLKKELAKL---------EKKLAK 940 Query: 386 LVSSLENVWQKMN 398 L SLE+ +K++ Sbjct: 941 LQKSLESYLKKIS 953 >gnl|CDD|185441 PTZ00094, PTZ00094, serine hydroxymethyltransferase; Provisional. Length = 452 Score = 28.0 bits (63), Expect = 4.3 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 4/41 (9%) Query: 162 DLEDLEKNLAATDLSIPKIIIF-ESIYSMDGDIAPIKEICD 201 D + LE+ PK+II S Y D D +EICD Sbjct: 170 DYDKLEEL---AKAFRPKLIIAGASAYPRDIDYKRFREICD 207 >gnl|CDD|183710 PRK12737, gatY, tagatose-bisphosphate aldolase; Reviewed. Length = 284 Score = 27.7 bits (62), Expect = 5.4 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Query: 160 HNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNA 208 H DL+D++K + I ++I S S + +IA +KE+ + +Y+A Sbjct: 84 HEDLDDIKKKV---RAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDA 129 >gnl|CDD|181321 PRK08248, PRK08248, O-acetylhomoserine aminocarboxypropyltransferase; Validated. Length = 431 Score = 27.5 bits (61), Expect = 6.0 Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 33/186 (17%) Query: 36 AIHNSDE-----GSRKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNY 90 AIH E GSR V I+ + Y + E+A F G TR + T Sbjct: 13 AIHAGQEIDPTTGSRAVPIYQTTSYGF-----RDSEHAANLFSLKEFGNIYTRIMNPTTD 67 Query: 91 YHVMLEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSD---------SHNH 141 + EK +A L G AL +SG A +I + S D I+ S +H Sbjct: 68 ---VFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTL 124 Query: 142 ASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICD 201 + GI K V + +D E+ E A TD + K + E+I + GD+ I+ + Sbjct: 125 PKL--GIT---VKFV--DPSDPENFEA--AITDKT--KALFAETIGNPKGDVLDIEAVAA 173 Query: 202 LADQYN 207 +A ++ Sbjct: 174 IAHEHG 179 >gnl|CDD|162266 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. Length = 495 Score = 27.2 bits (61), Expect = 6.6 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 14/54 (25%) Query: 209 ITYIDEVHAVGIHGSCGAGIS----EREGIMNRITIISGTLAK--GFGTFGGYI 256 I +IDE+ AVG GAG+ ERE +N++ L + GFGT G I Sbjct: 150 IIFIDEIDAVGRQR--GAGLGGGNDEREQTLNQL------LVEMDGFGTNTGVI 195 >gnl|CDD|181130 PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated. Length = 436 Score = 27.4 bits (61), Expect = 6.7 Identities = 14/39 (35%), Positives = 20/39 (51%) Query: 95 LEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNII 133 +E+ +A L G AAL+ SG A I L D+I+ Sbjct: 74 VEQRIAALEGGVAALLLASGQAAETFAILNLAGAGDHIV 112 >gnl|CDD|150253 pfam09515, Thia_YuaJ, Thiamine transporter protein (Thia_YuaJ). Members of this protein family have been assigned as thiamine transporters by a phylogenetic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Streptococcus mutans and Streptococcus pyogenes), yuaJ is the only THI-regulated gene. Evidence from Bacillus cereus indicates thiamine uptake is coupled to proton translocation. Length = 173 Score = 27.2 bits (61), Expect = 8.5 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 13/77 (16%) Query: 217 AVGIHGSCGAGISEREGIMNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFS 276 A+G+ G + + + II G + G+F Y C FI +G IF Sbjct: 82 ALGLAGLFAKKVRQNNKKKALLYIILGII---IGSFARY------FCHFI----AGVIFW 128 Query: 277 TSLPPAIASASVTSIQY 293 S P S + S+ Y Sbjct: 129 GSYAPKGMSPWLYSLVY 145 >gnl|CDD|162958 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit clpA. Length = 731 Score = 26.9 bits (60), Expect = 9.3 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 19/85 (22%) Query: 177 IPKIIIFESIYSMD-----------GDI-APIKEIC-DLADQYNAITYIDEVHAVGIHGS 223 +P+ + IYS+D GD +K + ++ + NAI +IDE+H + Sbjct: 232 VPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTI----- 286 Query: 224 CGAGISEREGIMNRITIISGTLAKG 248 GAG + G M+ ++ L+ G Sbjct: 287 VGAG-ATSGGSMDASNLLKPALSSG 310 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.137 0.412 Gapped Lambda K H 0.267 0.0721 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,634,818 Number of extensions: 429688 Number of successful extensions: 959 Number of sequences better than 10.0: 1 Number of HSP's gapped: 909 Number of HSP's successfully gapped: 67 Length of query: 401 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 305 Effective length of database: 3,920,105 Effective search space: 1195632025 Effective search space used: 1195632025 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.1 bits)