RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase
[Candidatus Liberibacter asiaticus str. psy62]
         (401 letters)



>gnl|CDD|181634 PRK09064, PRK09064, 5-aminolevulinate synthase; Validated.
          Length = 407

 Score =  720 bits (1860), Expect = 0.0
 Identities = 232/399 (58%), Positives = 305/399 (76%), Gaps = 1/399 (0%)

Query: 1   MDFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGS-RKVTIWCSNDYLGMG 59
           MD+E FF++ ++ L  E RYR F +L     +FPYA     +G  R+VT+WCSNDYLGMG
Sbjct: 1   MDYEAFFENALDRLKAEGRYRVFADLERIAGRFPYATWRRPDGGEREVTVWCSNDYLGMG 60

Query: 60  KHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANW 119
           +HPKVIE      ++CG GAGGTRNI+GTN+YHV LE+ELA LHGK+AAL+F SGY++N 
Sbjct: 61  QHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSND 120

Query: 120 ATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPK 179
           AT+ TL   I + + FSD  NHAS+IEGI ++RC+K I+ HND+  LE+ LAA D   PK
Sbjct: 121 ATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRHNDVAHLEELLAAADPDRPK 180

Query: 180 IIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRIT 239
           +I FES+YSMDGDIAPI EICDLAD+YNA+TY+DEVHAVG++G  G GI+ER+G+M+RI 
Sbjct: 181 LIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRID 240

Query: 240 IISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYD 299
           II GTLAK FG  GGYIA S  L D +RS+A GFIF+TSLPPAIA+A++ SI+++K+  +
Sbjct: 241 IIEGTLAKAFGVMGGYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNE 300

Query: 300 ERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPIN 359
           ER+++ ER  +L+ +L+   IP +PNESHI+P+MVGD  KC + S++LL+E GIY+QPIN
Sbjct: 301 ERERHQERAAKLKAALDAAGIPVMPNESHIVPVMVGDPEKCKKASDMLLEEHGIYVQPIN 360

Query: 360 YPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKMN 398
           YPTV +  ERLR+T TP HTD  I+HLV +L  VW ++ 
Sbjct: 361 YPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARLG 399


>gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional.
          Length = 406

 Score =  614 bits (1585), Expect = e-176
 Identities = 222/397 (55%), Positives = 299/397 (75%)

Query: 1   MDFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDYLGMGK 60
           M++E++F+ Q++ L  E RYR F +L  +   FP A H+  +G R+VT+WCSNDYLGMG+
Sbjct: 1   MNYEQYFQRQLDGLRREGRYRVFADLERQAGAFPRATHHGPDGPREVTVWCSNDYLGMGQ 60

Query: 61  HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWA 120
           HP V+       + CG GAGGTRNI+GTN+YHV+LE ELA LHGK+AAL+F SGY++NWA
Sbjct: 61  HPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWA 120

Query: 121 TIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKI 180
            + TL S++   +  SD  NHAS+IEGI  +R +K I+ HND  DLE+ L+  D   PK+
Sbjct: 121 ALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRHNDPADLERKLSDLDPHRPKL 180

Query: 181 IIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITI 240
           + FES+YSMDGDIAPI EICD+A+++ A+TY+DEVHAVG++G  G GI+EREG+ +R+TI
Sbjct: 181 VAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTI 240

Query: 241 ISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDE 300
           I GTLAK FG  GGYI  S  LCDFIRSFASGFIF+TSLPPA+A+ ++ S++++K    E
Sbjct: 241 IEGTLAKAFGVMGGYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAE 300

Query: 301 RKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINY 360
           R+++ +RV +LR  L+   IP +PN SHI+P+MVGD   C QIS+ LL  +GIY+QPINY
Sbjct: 301 RERHQDRVARLRARLDKAGIPHLPNPSHIVPVMVGDPVLCKQISDELLDRYGIYVQPINY 360

Query: 361 PTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKM 397
           PTV +  ERLR+T +PLHTD+DIEHLV +L  +W ++
Sbjct: 361 PTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARL 397


>gnl|CDD|162547 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase.  This
           model represents 5-aminolevulinic acid synthase, an
           enzyme for one of two routes to the heme precursor
           5-aminolevulinate. The protein is a pyridoxal
           phosphate-dependent enzyme related to
           2-amino-3-ketobutyrate CoA tranferase and
           8-amino-7-oxononanoate synthase. This enzyme appears
           restricted to the alpha Proteobacteria and mitochondrial
           derivatives.
          Length = 402

 Score =  604 bits (1560), Expect = e-173
 Identities = 223/394 (56%), Positives = 295/394 (74%)

Query: 1   MDFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDYLGMGK 60
           MD+++FF  +I+ LH E RYR F +L  +  +FP+A  +  +G++ VT+WCSNDYLGMG+
Sbjct: 1   MDYDQFFNKEIDKLHLEGRYRVFADLERQAGEFPFAQWHRPDGAKDVTVWCSNDYLGMGQ 60

Query: 61  HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWA 120
           HP+V++    T +K G GAGGTRNI+GTN  HV LE ELA LHGK++AL+F SGY+AN A
Sbjct: 61  HPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDA 120

Query: 121 TIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKI 180
           T+ TL   I   + FSD  NHAS+IEGI  +  +K I+ HND+  LEK L + D + PKI
Sbjct: 121 TLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRHNDVAHLEKLLQSVDPNRPKI 180

Query: 181 IIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITI 240
           I FES+YSMDGDIAPI+EICDLAD+Y A+TY+DEVHAVG++G  G GI+ER+G+M+RI I
Sbjct: 181 IAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDI 240

Query: 241 ISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDE 300
           I GTLAK FG  GGYIAAS  L D IRS+A GFIF+TSLPPAIA+ +  SI+++K+  D 
Sbjct: 241 IEGTLAKAFGVVGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDL 300

Query: 301 RKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINY 360
           R+ + E VK+L++ LE   IP IPN SHI+P+++GD+  C ++S++LL + GIY+QPINY
Sbjct: 301 RRAHQENVKRLKNLLEALGIPVIPNPSHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINY 360

Query: 361 PTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVW 394
           PTV +  ERLR+T TP HTD  I+ LV +L  VW
Sbjct: 361 PTVPRGTERLRITPTPAHTDKMIDDLVEALLLVW 394


>gnl|CDD|184023 PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional.
          Length = 410

 Score =  561 bits (1448), Expect = e-160
 Identities = 214/397 (53%), Positives = 291/397 (73%)

Query: 1   MDFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDYLGMGK 60
           M+++ +F   +  LH E RYR F +L  E  +FP A  +  +G R+VTIWCSNDYLGMG+
Sbjct: 2   MNYDSYFDAALAQLHQEGRYRVFADLEREAGRFPRARDHGPDGPRRVTIWCSNDYLGMGQ 61

Query: 61  HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWA 120
           HP VI       ++ G GAGGTRNI+GT++ HV+LE+ELA LHGK++AL+F SGY++N A
Sbjct: 62  HPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDA 121

Query: 121 TIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKI 180
            + TL   +   +  SD+ NHAS+IEGI ++  +K ++ HNDL DLE+ LA+ D   PK+
Sbjct: 122 ALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRHNDLADLEEQLASVDPDRPKL 181

Query: 181 IIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITI 240
           I FES+YSMDGDIAPI+ ICDLAD+YNA+TY+DEVHAVG++G+ G GI+ER+G+M+RI +
Sbjct: 182 IAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDM 241

Query: 241 ISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDE 300
           I GTLAK FG  GGYIAAS +L DF+RSFA GFIF+T+LPPA+A+ +  +I+++K    E
Sbjct: 242 IQGTLAKAFGCLGGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTE 301

Query: 301 RKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINY 360
           R  + +RV  L+  L    IP +P+ SHI+P+MVGD   C  IS+ L+ E GIYIQPINY
Sbjct: 302 RDAHQDRVAALKAKLNANGIPVMPSPSHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINY 361

Query: 361 PTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKM 397
           PTV +  ERLR+T TPLH D DI+ LV++L  +W ++
Sbjct: 362 PTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRL 398


>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase.  This model
           represents 8-amino-7-oxononanoate synthase, the BioF
           protein of biotin biosynthesis. This model is based on a
           careful phylogenetic analysis to separate members of
           this family from 2-amino-3-ketobutyrate and other
           related pyridoxal phosphate-dependent enzymes. In
           several species, including Staphylococcus and Coxiella,
           a candidate 8-amino-7-oxononanoate synthase is confirmed
           by location in the midst of a biotin biosynthesis operon
           but scores below the trusted cutoff of this model.
          Length = 360

 Score =  335 bits (861), Expect = 1e-92
 Identities = 128/348 (36%), Positives = 210/348 (60%), Gaps = 4/348 (1%)

Query: 45  RKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHG 104
           R++  + SNDYLG+  HP+VI+ AQ+  E+ G G+  +R ++G +  H  LE+ELA   G
Sbjct: 16  RRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKG 75

Query: 105 KKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLE 164
            +AAL+F+SGY+AN   I  L  + D  +  SD+ NHAS+I+G   +  +   + HND+E
Sbjct: 76  TEAALLFSSGYLANVGVISALVGKGD--LILSDALNHASLIDGCRLSGARVRRYRHNDVE 133

Query: 165 DLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSC 224
            LE+ L        K+I+ + ++SMDGDIAP+ ++  LA++Y A   +D+ H  G+ G  
Sbjct: 134 HLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGED 193

Query: 225 GAGISEREGIMNRITIIS-GTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAI 283
           G G  E  G+      I  GTL+K  G++G Y+A S+ L D++ + A   IFST+LPPA+
Sbjct: 194 GRGTLEHFGLKPEPVDIQVGTLSKALGSYGAYVAGSQALIDYLINRARTLIFSTALPPAV 253

Query: 284 ASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQI 343
           A+A++ +++ I++    R+K L  + +LR  LE      +P+ + I+P+++GD+     +
Sbjct: 254 AAAALAALELIQEEPWRREKLLALIARLRAGLEALGFTLMPSCTPIVPVIIGDNASALAL 313

Query: 344 SNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLE 391
           +  L ++ GI++  I  PTV     RLR+TL+  HT  DI+ L  +L+
Sbjct: 314 AEELQQQ-GIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360


>gnl|CDD|180327 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.
          Length = 385

 Score =  327 bits (841), Expect = 3e-90
 Identities = 124/345 (35%), Positives = 201/345 (58%), Gaps = 5/345 (1%)

Query: 51  CSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALI 110
            SNDYLG+ +HP++I  AQ+   + G G+GG+R + G +  H  LE+ELA   G + AL+
Sbjct: 45  ASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAERALL 104

Query: 111 FNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNL 170
           F+SGY AN A +  L  + D  +  SD  NHAS+I+G   +R +   + HND++ LE  L
Sbjct: 105 FSSGYAANLAVLTALAGKGD--LIVSDKLNHASLIDGARLSRARVRRYPHNDVDALEALL 162

Query: 171 AATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISE 230
           A        +I+ ES++SMDGD+AP+ E+  LA ++ A   +DE H  G+ G  G G++ 
Sbjct: 163 AKWRAG-RALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAA 221

Query: 231 REGIMNRITIIS-GTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVT 289
             G+     +I  GTL K  G+ G  +  SE L D++ + A  FIF+T+LPPA A+A+  
Sbjct: 222 EAGLAGEPDVILVGTLGKALGSSGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARA 281

Query: 290 SIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLK 349
           +++ +++  + R++    + +LR  L       + ++S I P++VGD+ +   ++   L+
Sbjct: 282 ALRILRREPERRERLAALIARLRAGLRALGFQLMDSQSAIQPLIVGDNERALALAA-ALQ 340

Query: 350 EFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVW 394
           E G ++  I  PTV     RLR+TLT  HT++DI+ L+ +L    
Sbjct: 341 EQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL 385


>gnl|CDD|180765 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase;
           Provisional.
          Length = 397

 Score =  306 bits (786), Expect = 7e-84
 Identities = 125/360 (34%), Positives = 207/360 (57%), Gaps = 6/360 (1%)

Query: 42  EGSRKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELAT 101
              ++V  +C+N+YLG+  HP++I  A+   +  G G    R I GT   H  LE++LA 
Sbjct: 39  ADGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAK 98

Query: 102 LHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHN 161
             G + A++++S + AN     TL  + D II  SD+ NHASII+G+   + K+  + +N
Sbjct: 99  FLGTEDAILYSSCFDANGGLFETLLGKEDAII--SDALNHASIIDGVRLCKAKRYRYANN 156

Query: 162 DLEDLEKNLAATDLSIP--KIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVG 219
           D+ DLE  L     +    K+I  + ++SMDGDIAP+ EICDLAD+Y+A+  +D+ HAVG
Sbjct: 157 DMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVG 216

Query: 220 IHGSCGAGISEREGIMNRITIISGTLAKGF-GTFGGYIAASENLCDFIRSFASGFIFSTS 278
             G  G G  E  G+M+R+ II+GTL K   G  GGY A  + + D++R  +  ++FS S
Sbjct: 217 FVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGRKEVIDWLRQRSRPYLFSNS 276

Query: 279 LPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSH 338
           L PAI +AS+  ++ +++  + R +  E  +  R  +        P E  IIP+M+GD+ 
Sbjct: 277 LAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAAGFTLGPGEHPIIPVMLGDAK 336

Query: 339 KCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKMN 398
              + ++ LL+E G+Y+   ++P V K + R+R  ++  HT   ++  + + E V +++ 
Sbjct: 337 LAQEFADRLLEE-GVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKELG 395


>gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent
           acyltransferase, putative.  This model represents an
           enzyme subfamily related to three known enzymes; it
           appears closest to glycine C-acteyltransferase, shows no
           overlap with it in species distribution, and may share
           that function. The three closely related enzymes are
           glycine C-acetyltransferase (2-amino-3-ketobutyrate
           coenzyme A ligase), 5-aminolevulinic acid synthase, and
           8-amino-7-oxononanoate synthase. All transfer the
           R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from
           coenzyme A to an amino acid (Gly, Gly, Ala,
           respectively), with release of CO2 for the latter two
           reactions.
          Length = 385

 Score =  272 bits (696), Expect = 1e-73
 Identities = 117/353 (33%), Positives = 200/353 (56%), Gaps = 3/353 (0%)

Query: 45  RKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHG 104
           ++V    SN+YLG   HP++ E A +  ++ G+GAG  R IAGT   H  LE++LA    
Sbjct: 33  KEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKK 92

Query: 105 KKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLE 164
            +AAL+F SG+  N   +  L  + D ++  SD  NHASII+G+   +  K I+ H D++
Sbjct: 93  TEAALVFQSGFNTNQGVLSALLRKGDIVL--SDELNHASIIDGLRLTKATKKIYKHADMD 150

Query: 165 DLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSC 224
           DL++ L        K+I+ + ++SMDGD+AP+ EI +LA++Y A+TY+D+ H  G+ G  
Sbjct: 151 DLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEA 210

Query: 225 GAGISEREGIMNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIA 284
           G G     G+ +++ I  GTL+K  G  GGY A  + L +++++ A  F+FST+ PPA+ 
Sbjct: 211 GRGTVHHFGLEDKVDIQVGTLSKAIGVVGGYAAGHKELIEYLKNRARPFLFSTAQPPAVV 270

Query: 285 SASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQIS 344
           +A   ++  +++  +  ++  +  +  +  L         +E+ I P+++GD     + S
Sbjct: 271 AALAAAVDELQRSPELMERLWDNTRFFKAGLGKLGYDTGGSETPITPVVIGDEKAAQEFS 330

Query: 345 NILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKM 397
             L  E GI+ Q I +PTV +   R+R   T  HT  D++  + + E V +++
Sbjct: 331 RRLFDE-GIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKEL 382


>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase. 
           This model represents a narrowly defined clade of animal
           and bacterial (almost exclusively Proteobacterial)
           2-amino-3-ketobutyrate--CoA ligase. This enzyme can act
           in threonine catabolism. The closest homolog from
           Bacillus subtilis, and sequences like it, may be
           functionally equivalent but were not included in the
           model because of difficulty in finding reports of
           function.
          Length = 393

 Score =  255 bits (652), Expect = 2e-68
 Identities = 120/352 (34%), Positives = 194/352 (55%), Gaps = 6/352 (1%)

Query: 45  RKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHG 104
           R+V  +C+N+YLG+  HP +I+ A+   ++ G G    R I GT   H  LE ++A   G
Sbjct: 38  REVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLG 97

Query: 105 KKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLE 164
            +  +++ S + AN     TL    D II  SD+ NHASII+G+   + K+  + +ND+ 
Sbjct: 98  TEDTILYASCFDANGGLFETLLGAEDAII--SDALNHASIIDGVRLCKAKRYRYANNDMA 155

Query: 165 DLEKNLAATDLSIPK--IIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHG 222
           DLE  L     +  +  +I  + ++SMDG IAP+ EICDLAD+Y+A+  +DE HA G  G
Sbjct: 156 DLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLG 215

Query: 223 SCGAGISEREGIMNRITIISGTLAKGF-GTFGGYIAASENLCDFIRSFASGFIFSTSLPP 281
             G G  E  G+M R+ II+GTL K   G  GG+  A + + + +R  +  ++FS SLPP
Sbjct: 216 PTGRGSHELCGVMGRVDIITGTLGKALGGASGGFTTARKEVVELLRQRSRPYLFSNSLPP 275

Query: 282 AIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCT 341
           A+  AS+  ++ ++   + R +     +  R  +E       P +  IIP+M+ D+    
Sbjct: 276 AVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAAGFDIKPADHPIIPVMLYDAVLAQ 335

Query: 342 QISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENV 393
           + +  LL+E GIY+    YP V K + R+RV ++  HT+  ++  V +   +
Sbjct: 336 RFARRLLEE-GIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRI 386


>gnl|CDD|178541 PLN02955, PLN02955, 8-amino-7-oxononanoate synthase.
          Length = 476

 Score =  201 bits (511), Expect = 3e-52
 Identities = 117/365 (32%), Positives = 194/365 (53%), Gaps = 24/365 (6%)

Query: 44  SRKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLH 103
            +K+ ++  NDYLG+  HP +   A    ++ G+G  G+  I G   YH +LE  LA L 
Sbjct: 101 FKKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK 160

Query: 104 GKKAALIFNSGYIANWA---TIGTLCSQI---------DNIICFSDSHNHASIIEGINKA 151
            K+  L+  +G+ AN A    IG++ S +         + +  FSD+ NHASII+G+  A
Sbjct: 161 KKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLA 220

Query: 152 R----CKKVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYN 207
                 +  ++ H D+  L   L++  +   K+++ +S++SMDGD AP++E+  L  +Y 
Sbjct: 221 ERQGNVEVFVYRHCDMYHLNSLLSSCKMK-RKVVVTDSLFSMDGDFAPMEELSQLRKKYG 279

Query: 208 AITYIDEVHAVGIHGSCGAGISEREGIMNRITIISGTLAKGFGTFGGYIAASENLCDFIR 267
            +  ID+ H   + G  G G++E       + +  GTL+K  G  GG+IA S+     I+
Sbjct: 280 FLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHGGFIACSKKWKQLIQ 339

Query: 268 SFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNES 327
           S    FIFST++P  +A+A+  ++   ++    RK   ERVK+ +      A+  +   S
Sbjct: 340 SRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFK------ALSGVDISS 393

Query: 328 HIIPIMVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLV 387
            II ++VG+  K  + S  LLK  G ++  I  PTV     RLRVTL+  HT  D++ L+
Sbjct: 394 PIISLVVGNQEKALKASRYLLKS-GFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLI 452

Query: 388 SSLEN 392
           ++L +
Sbjct: 453 TALSS 457


>gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase.
          Length = 489

 Score =  171 bits (436), Expect = 2e-43
 Identities = 101/355 (28%), Positives = 166/355 (46%), Gaps = 29/355 (8%)

Query: 52  SNDYLGMGKH-----PKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKK 106
           S +YLG         P+VIE    + +K       +R   GT   H  LE+ +A   GK 
Sbjct: 107 SYNYLGFAAADEYCTPRVIE----SLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKP 162

Query: 107 AALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDL 166
           AA++F  GY  N   I  L  +   II  SDS NH SI+ G   +     ++ HN    L
Sbjct: 163 AAIVFGMGYATNSTIIPALIGKGGLII--SDSLNHNSIVNGARGSGATIRVFQHNTPSHL 220

Query: 167 EKNL--------AATDLSIPKII-IFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHA 217
           E+ L          T     KII I E IYSM+G++  + EI  +  +Y A  Y+DE H+
Sbjct: 221 EEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHS 280

Query: 218 VGIHGSCGAGISEREGIMNR-ITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFS 276
           +G  G  G G+ E  G+    + I+ GT  K FG+ GGYIA S+ L  +++      +++
Sbjct: 281 IGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKRTCPAHLYA 340

Query: 277 TSLPPAIASASVTSIQYI--KQHYDERKKYLERVKQ----LRHSLENKAIPCI-PNESHI 329
           TS+ P      +++I+ I  +   +   + L ++++     R  L+      +  N+S +
Sbjct: 341 TSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMGFEVLGDNDSPV 400

Query: 330 IPIMVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIE 384
           +PIM+ +  K    S   LK+  + +  + +P       R R+ ++  H+  D+ 
Sbjct: 401 MPIMLYNPAKIPAFSRECLKQ-NVAVVVVGFPATPLLLARARICISASHSREDLI 454


>gnl|CDD|178417 PLN02822, PLN02822, serine palmitoyltransferase.
          Length = 481

 Score =  171 bits (435), Expect = 3e-43
 Identities = 107/381 (28%), Positives = 180/381 (47%), Gaps = 29/381 (7%)

Query: 34  PYAIHNSDEGSRKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHV 93
           P+ I N     + V  + S +YLG+  + K+ E+     EK G+G+ G R   GT   H+
Sbjct: 102 PHTIING----KDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHL 157

Query: 94  MLEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARC 153
             E ++A   G   +++++ G    ++ I   C + D I+   D   H  I  G+  +R 
Sbjct: 158 DCETKIAKFLGTPDSILYSYGLSTIFSVIPAFCKKGDIIVA--DEGVHWGIQNGLYLSRS 215

Query: 154 KKVIWNHNDLEDLEKNLAATDL------SIPKIIIFESIYSMDGDIAPIKEICDLADQYN 207
             V + HND+E L   L            + + I+ E+IY   G IAP+ EI  L ++Y 
Sbjct: 216 TIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYR 275

Query: 208 AITYIDEVHAVGIHGSCGAGISEREGI-MNRITIISGTLAKGFGTFGGYIAASENLCDFI 266
               +DE ++ G+ G  G G+SE  G+ + +I II+  +     T GG+   S  + D  
Sbjct: 276 FRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEGGFCTGSARVVDHQ 335

Query: 267 RSFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNE 326
           R  +SG++FS SLPP +ASA++T+I  ++ +     K  E +  L   L +  IP +   
Sbjct: 336 RLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSD--IPGLSIG 393

Query: 327 SHII-PI-----------MVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKK--ERLRV 372
           S+ + PI              D      I++ +LKE  + +      T+ K +    +R+
Sbjct: 394 SNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRL 453

Query: 373 TLTPLHTDSDIEHLVSSLENV 393
            ++  HT+SDI     SL+ V
Sbjct: 454 FVSAGHTESDILKASESLKRV 474


>gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional.
          Length = 407

 Score =  164 bits (417), Expect = 4e-41
 Identities = 94/341 (27%), Positives = 160/341 (46%), Gaps = 9/341 (2%)

Query: 52  SNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIF 111
           SNDYL +  HP +I+      ++ G     +      +      EK+LA   G ++ L+ 
Sbjct: 61  SNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFESCLLC 120

Query: 112 NSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLA 171
            SG+ AN   + T+     N   + D   H S+ EG+  A  +   + HND++ L + + 
Sbjct: 121 QSGWAANVGLLQTIADP--NTPVYIDFFAHMSLWEGVRAAGAQAHPFRHNDVDHLRRQIE 178

Query: 172 ATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISER 231
                 P II+ +S+YS  G IAP+ +I D+A+++  +  +DE H++G HG  GAG+   
Sbjct: 179 RHG---PGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAE 235

Query: 232 EGIMNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIF-STSLPPAIASASVTS 290
            G+ +R+  I+ +LAK F    G I     L +++   +   IF ST LP  IA    T 
Sbjct: 236 LGLTSRVHFITASLAKAFAGRAGIITCPRELAEYVPFVSYPAIFSSTLLPHEIAGLEAT- 294

Query: 291 IQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKE 350
           ++ I+   D R +     + LR  L       I +ES II +  G     T++    L+E
Sbjct: 295 LEVIESADDRRARLHANARFLREGLSELGYN-IRSESQIIALETGSERN-TEVLRDALEE 352

Query: 351 FGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLE 391
             ++      P   K +  +R++L    T SD++ ++    
Sbjct: 353 RNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCR 393


>gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional.
          Length = 402

 Score =  156 bits (397), Expect = 9e-39
 Identities = 107/378 (28%), Positives = 169/378 (44%), Gaps = 38/378 (10%)

Query: 36  AIHNSDEGSRKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRN--IAGTNYYHV 93
            I  +         + S  YLG+  HP +IE A        +   G+ +   + T     
Sbjct: 37  GILITLADGHTFVNFVSCSYLGLDTHPAIIEGAVD-----ALKRTGSLHLSSSRTRVRSQ 91

Query: 94  ML---EKELATLHGKKAALIFNSGYIANWATIGTLCSQI----DNIICFSDSHNHAS--I 144
           +L   E+ L+ L G  + L F S   A+   +  L S             D + HAS  I
Sbjct: 92  ILKDLEEALSELFGA-SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNI 150

Query: 145 IEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLAD 204
           ++GI     +    +HNDL+ LE ++  T+ ++    + + +YSM G IAP+KE+  L +
Sbjct: 151 LKGICADETEVETIDHNDLDALE-DICKTNKTV--AYVADGVYSM-GGIAPVKELLRLQE 206

Query: 205 QYNAITYIDEVHAVGIHGSCGAG--ISEREGIMNRITIISGTLAKGFGTFGGYIA-ASEN 261
           +Y    YID+ H + I+G  G G   SE +  +N  TII+ +L K FG  GG I      
Sbjct: 207 KYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASGGVIMLGDAE 266

Query: 262 LCDFIRSFASGFIFSTSLPPAIASASVTSIQ-YIKQHYDERKKYLERVKQLRHSLENKAI 320
             + I  +A    FS SL  A   A + S + ++ +  D+ ++ L+    L  SL     
Sbjct: 267 QIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSL----- 321

Query: 321 PCIPNE-----SHIIPIMVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLT 375
             IP E       I  I +GD     + +  LL   G Y  P+ +P VAK +  LR+   
Sbjct: 322 --IPTEQSGSFLPIRLIYIGDEDTAIKAAKQLLDR-GFYTSPVFFPVVAKGRAGLRIMFR 378

Query: 376 PLHTDSDIEHLVSSLENV 393
             HT+ +I+ L S L+ +
Sbjct: 379 ASHTNDEIKRLCSLLKEI 396


>gnl|CDD|178766 PLN03227, PLN03227, serine palmitoyltransferase-like protein;
           Provisional.
          Length = 392

 Score =  141 bits (357), Expect = 3e-34
 Identities = 87/385 (22%), Positives = 163/385 (42%), Gaps = 38/385 (9%)

Query: 52  SNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIF 111
           ++D+L     P + + A  +    G G+ G R   GT   H+ LE+ +A   G ++A+++
Sbjct: 5   THDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILY 64

Query: 112 NSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLA 171
           + G     +T+     + D ++   D   + +++ G++ +R     + HND++DL + L 
Sbjct: 65  SDGASTTSSTVAAFAKRGDLLV--VDRGVNEALLVGVSLSRANVRWFRHNDMKDLRRVLE 122

Query: 172 ---ATDLSIP-------KIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIH 221
              A D+++        + ++ E +Y   G +AP+KE+  L ++++    +DE  + G  
Sbjct: 123 QVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTL 182

Query: 222 GSCGAGISEREGI--MNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSL 279
           G  G G  E  G+  M    I++ +L   FG+ GG    SE + D  R   SG+ FS S 
Sbjct: 183 GKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVGGMTVGSEEVVDHQRLSGSGYCFSASA 242

Query: 280 PPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIP-CIPNE----------SH 328
           PP +A A  T+            +  + +  L  +L N + P  +             S 
Sbjct: 243 PPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISP 302

Query: 329 IIPIMVGDSHKCTQI-SNILLKE---------FGIYIQPINYPTV--AKKKERLRVTLTP 376
           II + + D     +    ++L +           +     +            LRV    
Sbjct: 303 IIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANA 362

Query: 377 LHTDSDIEHLVSSL-ENVWQKMNRY 400
            HT  DI+ L++ L E V   + + 
Sbjct: 363 SHTREDIDKLLTVLGEAVEAILCKI 387


>gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional.
          Length = 370

 Score =  114 bits (288), Expect = 3e-26
 Identities = 98/355 (27%), Positives = 161/355 (45%), Gaps = 25/355 (7%)

Query: 52  SNDYLGMGKHPKVIENAQR-------TFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHG 104
           +ND+LG  +   ++   ++        F    +G GG+R I G +     LE ++A  HG
Sbjct: 11  TNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHG 70

Query: 105 KKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLE 164
              A I  SGY+AN      L S  D      D   H S++  ++        + HNDL+
Sbjct: 71  APEAFIVPSGYMANLGLCAHLSSVTD--YVLWDEQVHISVVYSLSVISGWHQSFRHNDLD 128

Query: 165 DLEKNLAA-TDLSIPKIIIFE-SIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHG 222
            LE  L +    S  +I IF  S+YS  G +AP+++I  L+ +Y+A   +DE HA+GI G
Sbjct: 129 HLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFG 188

Query: 223 SCGAGISEREGIMNRITIISGTLAKGFGTFGGYI-AASENLCDFIRSFASGFIFSTSLPP 281
             G G     G  N   ++  T +K  G+ G  + ++SE   D + + +    +ST LPP
Sbjct: 189 DDGKGFCHSLGYENFYAVLV-TYSKALGSMGAALLSSSEVKQDLMLN-SPPLRYSTGLPP 246

Query: 282 AIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCT 341
            +  +   +  ++ Q  +  +K L R+K+      + A P       + PI +       
Sbjct: 247 HLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSAAPGC-----VQPIFL--PGISE 299

Query: 342 QISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQK 396
           Q     L E GI +  + +P        LRV L   +T+ +++ LVS L    +K
Sbjct: 300 QELYSKLVETGIRVGVVCFP----TGPFLRVNLHAFNTEDEVDILVSVLATYLEK 350


>gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional.
          Length = 403

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 27/172 (15%)

Query: 62  PKVIENAQRTFEKCGIGAG---GTRNIAGTNYYHV------MLEKELATLHGKKAALIFN 112
           P V   A   F     GA    G     G  Y  +      +LE+ +A+L G +AA+   
Sbjct: 30  PPVYLTATFAFPTAEYGAECFAGEE--EGHFYSRISNPTLALLEQRMASLEGGEAAVALA 87

Query: 113 SGYIANWATIGTLCSQIDNII-------CFSDSHNHASIIEGINKARCKKVIWNHNDLED 165
           SG  A  AT+ TL    D +I       C       A +  G+ +     V   H DL D
Sbjct: 88  SGMGAITATLWTLLRPGDEVIVDQTLYGC-----TFAFLHHGLGEF---GVTVRHVDLTD 139

Query: 166 LEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHA 217
               L A      +++ FE+  + +  +  I  + ++A    A   +D  + 
Sbjct: 140 PA-ALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYC 190


>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase.  This model
           describes a distinct clade of the Cys/Met metabolism
           pyridoxal phosphate-dependent enzyme superfamily.
           Members include examples of OAH/OAS sulfhydrylase, an
           enzyme with activity both as O-acetylhomoserine (OAH)
           sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS)
           sulphydrylase (EC 2.5.1.47). An alternate name for OAH
           sulfhydrylase is homocysteine synthase. This model is
           designated subfamily because it may or may not have both
           activities.
          Length = 418

 Score = 36.6 bits (85), Expect = 0.011
 Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 41/186 (22%)

Query: 36  AIH-----NSDEGSRKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNY 90
            +H     +   GSR V I+ +  Y        V ++ +      G+   G  NI    Y
Sbjct: 6   QLHAGQEPDPTTGSRAVPIYQTTSY--------VFDSTEHAAALFGLQEAG--NI----Y 51

Query: 91  YHVM------LEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIIC----FSDSHN 140
             +M      LE+ +A L G  AAL   SG  A    I  L    DNI+     +  ++N
Sbjct: 52  SRLMNPTTDVLEQRIAALEGGVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYN 111

Query: 141 ---HASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIK 197
              H     GI + R      + +D E+ EK   A D +  K +  E+I +   ++  I+
Sbjct: 112 LFKHTLKRLGI-EVR----FVDPDDPEEFEK---AIDENT-KAVFAETIGNPAINVPDIE 162

Query: 198 EICDLA 203
            I ++A
Sbjct: 163 AIAEVA 168


>gnl|CDD|132344 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase.
           This family includes a number of 2-aminoethylphosphonate
           aminotransferases, some of which are indicated to
           operate in the catabolism of 2-aminoethylphosphonate
           (AEP) and others which are involved in the biosynthesis
           of the same compound. The catabolic enzyme (PhnW, ) is
           known to use pyruvate:alanine as the transfer partner
           and is modeled by the equivalog-level alignment
           (TIGR02326). The PhnW family is apparently a branch of a
           larger tree including genes (AepZ) adjacent to others
           responsible for the biosynthesis of
           phosphonoacetaldehyde. The identity of the transfer
           partner is unknown for these enzymes and considering the
           reversed flux compared to PhnW, it may very well be
           different.
          Length = 355

 Score = 36.2 bits (84), Expect = 0.014
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 10/131 (7%)

Query: 99  LATLHGKKAA-LIFNSGYIANWATIGTLCSQIDNIICFSD---SHNHASIIE--GINKAR 152
           LA         L+  SG  A  ATIG+L  +   ++   +       A I E  GI    
Sbjct: 43  LAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGERLAKICEYLGIPHTD 102

Query: 153 CKKVIWNHNDLEDLEKNLAA-TDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITY 211
                +   DL  +E+ LAA  D++    +  E+   +   + P++ I  +A  + A+  
Sbjct: 103 LNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGI---LNPLEAIAKVARSHGAVLI 159

Query: 212 IDEVHAVGIHG 222
           +D + + G   
Sbjct: 160 VDAMSSFGAIP 170


>gnl|CDD|178323 PLN02721, PLN02721, threonine aldolase.
          Length = 353

 Score = 36.2 bits (84), Expect = 0.014
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 95  LEKELATLHGKKAALIFNSGYIANWATIGTLCS-QIDNIICFSDSHNH 141
           LE+E+A + GK+AAL   SG + N  ++   C  +   +I   +SH H
Sbjct: 45  LEEEMAKIFGKEAALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIH 92


>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional.
          Length = 408

 Score = 34.9 bits (80), Expect = 0.040
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 26/105 (24%)

Query: 161 NDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAP-----IKEICDLADQYNAITYIDEV 215
           ND+E LE  +A  D++    ++ E I   +G + P     +  +  L DQ++A+  +DE+
Sbjct: 174 NDVEALEAAMAGGDVAA---VMLEPIQG-EGGVMPAAPGFLARVRALCDQHDALLVLDEI 229

Query: 216 HAVGIHGSCGAGISEREGIM-----NRITIISGTLAKGFGTFGGY 255
                   CG G   R G +      ++T    TLAK  G  GG+
Sbjct: 230 Q-------CGMG---RTGTLFAHWQEQVTPDIVTLAKALG--GGF 262


>gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine
           aminocarboxypropyltransferase; Validated.
          Length = 425

 Score = 34.9 bits (80), Expect = 0.041
 Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 22/146 (15%)

Query: 85  IAGTNYYHVM------LEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIIC---- 134
           + G  Y  +M      LE+ +A L G   AL   SG  A    I T+    DNI+     
Sbjct: 47  VPGNIYTRIMNPTNDVLEQRVAALEGGVGALAVASGMAAITYAIQTIAEAGDNIVSVAKL 106

Query: 135 FSDSHN---HASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDG 191
           +  ++N   H     GI + R       H+D+  LE   A  D    K +  ESI +  G
Sbjct: 107 YGGTYNLLAHTLPRIGI-ETR----FAAHDDIAALE---ALID-ERTKAVFCESIGNPAG 157

Query: 192 DIAPIKEICDLADQYNAITYIDEVHA 217
           +I  I+ + D A ++     +D   A
Sbjct: 158 NIIDIQALADAAHRHGVPLIVDNTVA 183


>gnl|CDD|162223 TIGR01141, hisC, histidinol-phosphate aminotransferase.
           Histidinol-phosphate aminotransferase is a
           pyridoxal-phosphate dependent enzyme.
          Length = 346

 Score = 33.8 bits (78), Expect = 0.077
 Identities = 58/282 (20%), Positives = 114/282 (40%), Gaps = 39/282 (13%)

Query: 124 TLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKIIIF 183
                 D ++    +++   I   I+ A   KV  + +   DLE  L A D   PK++  
Sbjct: 90  AFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDEDGQLDLEDILVAID-DKPKLVFL 148

Query: 184 ESIYSMDGDIAPIKEICDLADQ--YNAITYIDE--VHAVGIHGSCGAGISEREGIMNRIT 239
            S  +  G++    +I  + ++   +A+  +DE      G   +    ++E   +     
Sbjct: 149 CSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLP-LLAEYPNL----- 202

Query: 240 IISGTLAKGFGTFG---GYIAASENLCDFI-RSFASGFIFSTSLPPAIASASVTSIQYIK 295
           I+  TL+K FG  G   GY  A+  + D + +  A    F+ S       A   +I  + 
Sbjct: 203 IVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRAP---FNLSRL-----AQAAAIAAL- 253

Query: 296 QHYDERKKYLERVKQLRHSLEN--KAIPC---IPNESHIIPIMV-GDSHKCTQISNILLK 349
           +  D  +K +E +   R  L +  K +P     P++++ + I    D+    +     L 
Sbjct: 254 RDDDFIEKTVEEINAERERLYDGLKKLPGLEVYPSDANFVLIRFPRDADALFE----ALL 309

Query: 350 EFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLE 391
           E GI ++ +N          LR+T+    T  + +  +++L 
Sbjct: 310 EKGIIVRDLNSYP--GLPNCLRITVG---TREENDRFLAALR 346


>gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase.  This model
           describes a methionine gamma-lyase subset of a family of
           PLP-dependent trans-sulfuration enzymes. The member from
           the parasite Trichomonas vaginalis is described as
           catalyzing alpha gamma- and alpha-beta eliminations and
           gamma-replacement reactions on methionine, cysteine, and
           some derivatives. Likewise, the enzyme from Pseudomonas
           degrades cysteine as well as methionine.
          Length = 391

 Score = 33.3 bits (76), Expect = 0.10
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 13/82 (15%)

Query: 62  PKVIENAQRTFEKCGIGAGGTRNIAGTNYYHV----------MLEKELATLHGKKAALIF 111
           P + + +   F+ C    GG R  AG    ++           LE  +A L G +AA+  
Sbjct: 24  PPIYQTSTFVFDSCE--QGGNR-FAGQESGYIYSRLGNPTVSNLEGRIAFLEGTEAAVAT 80

Query: 112 NSGYIANWATIGTLCSQIDNII 133
           +SG  A  AT+ T+    D++I
Sbjct: 81  SSGMGAIAATLLTILKAGDHLI 102


>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated.
          Length = 378

 Score = 33.2 bits (76), Expect = 0.11
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 13/134 (9%)

Query: 196 IKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITIISGTLAKGFGTFG-- 253
           ++EI  + ++++ I   DE++A   +       +  +G+  R  +ISG  +KGF   G  
Sbjct: 176 LEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISG-FSKGFAMTGWR 234

Query: 254 -GYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDE----RKKYLERV 308
            G+IAA     + +       I   S+  A   A   +++ ++   D+    R  Y +R 
Sbjct: 235 LGFIAAPVYFSEAMLK-----IHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRR 289

Query: 309 KQLRHSLENKAIPC 322
                S     + C
Sbjct: 290 NFFVTSFNEIGLTC 303


>gnl|CDD|182269 PRK10150, PRK10150, beta-D-glucuronidase; Provisional.
          Length = 604

 Score = 33.1 bits (76), Expect = 0.13
 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 198 EICDLADQYNAITYIDEVHAVGIHGSCGAGIS 229
           E+ DLAD++  I  IDE  AVG++ S GAG+ 
Sbjct: 340 EMLDLADRH-GIVVIDETPAVGLNLSFGAGLE 370


>gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional.
          Length = 386

 Score = 32.1 bits (73), Expect = 0.24
 Identities = 16/41 (39%), Positives = 22/41 (53%)

Query: 94  MLEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIIC 134
           + E+ +A L G + AL F SG  A  AT+       D+IIC
Sbjct: 65  LFEERMAVLEGGEEALAFGSGMAAISATLIGFLKAGDHIIC 105


>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufS subfamily.  This model
           represents a subfamily of NifS-related cysteine
           desulfurases involved in FeS cluster formation needed
           for nitrogen fixation among other vital functions. Many
           cysteine desulfurases are also active as selenocysteine
           lyase and/or cysteine sulfinate desulfinase. This
           subfamily is associated with the six-gene SUF system
           described in E. coli and Erwinia as an FeS cluster
           formation system during oxidative stress. The active
           site Cys is this subfamily resembles GHHC with one or
           both His conserved.
          Length = 403

 Score = 31.5 bits (72), Expect = 0.39
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 162 DLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAV 218
           DL+DLEK L        K++    + ++ G + P++EI  LA Q  A   +D   AV
Sbjct: 148 DLDDLEKLLTEK----TKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAV 200


>gnl|CDD|163338 TIGR03588, PseC, UDP-4-keto-6-deoxy-N-acetylglucosamine
           4-aminotransferase.  This family of enzymes are
           aminotransferases of the pfam01041 family involved in
           the biosynthesis of pseudaminic acid. They convert
           UDP-4-keto-6-deoxy-N-acetylglucosamine into
           UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic
           acid has a role in surface polysaccharide in Pseudomonas
           as well as in the modification of flagellin in
           Campylobacter and Helicobacter species.
          Length = 380

 Score = 31.1 bits (71), Expect = 0.48
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 162 DLEDLEKNLAATDLSIPKIIIFESIYSMD--GDIAPIKEICDLADQYNAITYIDEVHAVG 219
           D + LEK LAA    +PK I+      +D  G    ++ I  LA ++      D  HA+G
Sbjct: 106 DEDALEKKLAAAKGKLPKAIV-----PVDFAGKSVDMQAIAALAKKHGLKIIEDASHALG 160


>gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS.  Members of this
           protein family are NifS, one of several related families
           of cysteine desulfurase involved in iron-sulfur (FeS)
           cluster biosynthesis. NifS is part of the NIF system,
           usually associated with other nif genes involved in
           nitrogenase expression and nitrogen fixation. The
           protein family is given a fairly broad interpretation
           here. It includes a clade nearly always found in
           extended nitrogen fixation genomic regions, plus a
           second clade more closely related to the first than to
           IscS and also part of NifS-like/NifU-like systems. This
           model does not extend to a more distantly clade found in
           the epsilon proteobacteria such as Helicobacter pylori,
           also named NifS in the literature, built instead in
           TIGR03403.
          Length = 379

 Score = 31.0 bits (71), Expect = 0.49
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 162 DLEDLEKNLAATDLSIPKIIIFESIYSMD--GDIAPIKEICDLADQYNAITYIDEVHAVG 219
           DLE+L   +           +   +++ +  G I PI+EI ++A +  A+ + D V AVG
Sbjct: 125 DLEELRAAIT------DDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVG 178


>gnl|CDD|182527 PRK10534, PRK10534, L-threonine aldolase; Provisional.
          Length = 333

 Score = 30.9 bits (70), Expect = 0.55
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 95  LEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNH 141
           L+   A L GK+AAL   +G  AN   + + C + +  I    +HN+
Sbjct: 39  LQDYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQAAHNY 85


>gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional.
          Length = 389

 Score = 30.8 bits (70), Expect = 0.60
 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 3/120 (2%)

Query: 94  MLEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARC 153
             E+ LA L G + A  F SG  A  +T+ +     D I+     +  A  +      R 
Sbjct: 67  AFEEMLAKLEGAEDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRM 126

Query: 154 KKVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYID 213
             V  ++ D  D E    A  L   K++  ES  S   ++  +  +  LA ++  +T ID
Sbjct: 127 -GVEVDYVDGRDEEAVAKA--LPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMID 183


>gnl|CDD|185305 PRK15407, PRK15407, lipopolysaccharide biosynthesis protein RfbH;
           Provisional.
          Length = 438

 Score = 29.5 bits (67), Expect = 1.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 91  YHVMLEKELATLHGKKAALIFNSGYIANWATIGTLCS 127
           ++   EK+LA   G + AL+ NSG  AN      L S
Sbjct: 64  FNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTS 100


>gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated.
          Length = 390

 Score = 29.2 bits (66), Expect = 1.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 94  MLEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIIC 134
           M ++ LA L G +A +   SG  A  A +  L    D+++ 
Sbjct: 65  MFQERLAALEGAEACVATASGMAAILAVVMALLQAGDHVVS 105


>gnl|CDD|181129 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional.
          Length = 388

 Score = 29.2 bits (66), Expect = 1.8
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 68  AQRTFEKCGIGA--GGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWATIGTL 125
           A  TF + G+G   GG       N     LE++LA L G      F+SG  A    +  +
Sbjct: 37  ASSTFAQDGVGGLRGGYEYARTGNPTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAV 96

Query: 126 CSQIDNII 133
               D+I+
Sbjct: 97  LRPGDHIV 104


>gnl|CDD|162859 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.  A number of
           genomes (actinobacteria, cyanobacteria,
           betaproteobacteria and pseudomonads) which apparently
           biosynthesize B12, encode a cobN gene but are
           demonstrably lacking cobS and cobT. These genomes do,
           however contain a homolog (modelled here) of the
           magnesium chelatase subunits BchI/BchD family. Aside
           from the cyanobacteria (which have a separate magnesium
           chelatase trimer), these species do not make chlorins,
           so do not have any use for a magnesium chelatase.
           Furthermore, in nearly all cases the members of this
           family are proximal to either CobN itself or other genes
           involved in cobalt transport or B12 biosynthesis.
          Length = 633

 Score = 29.3 bits (66), Expect = 1.9
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 13/56 (23%)

Query: 202 LADQYNAITYIDEV-----HAVG-IHGSCGAGIS--EREGIMN----RITIISGTL 245
           LA+ +  I YIDEV     H V  +  +   G++  EREG+      R  +I GT+
Sbjct: 122 LAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLI-GTM 176


>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
           Provisional.
          Length = 459

 Score = 29.3 bits (66), Expect = 2.0
 Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 21/141 (14%)

Query: 162 DLEDLEKNLAATDLSIPKI--IIFESIYSMDGDIAP----IKEICDLADQYNAITYIDEV 215
           ++E +   L+    +   +  +I E I    G I P    +  +  L D++ A+  +DEV
Sbjct: 214 NIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEV 273

Query: 216 H-AVGIHGSCGAGISEREGIMNRITIISGTLAKGFGTFGGYIAASENLCD---FIRSFAS 271
              +G  G   A   E E +   I      LAK  G  GG +     +     F   F +
Sbjct: 274 QTGMGRTGKMFA--CEHENVQPDIL----CLAKALG--GGVMPIGATIATEEVFSVLFDN 325

Query: 272 GFIFSTSL---PPAIASASVT 289
            F+ +T+    P A A+A  T
Sbjct: 326 PFLHTTTFGGNPLACAAALAT 346


>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
           This model describes a subfamily of probable pyridoxal
           phosphate-dependent enzymes in the aminotransferase
           class V family. Related families contain members active
           as cysteine desulfurases, selenocysteine lyases, or
           both. The members of this family form a distinct clade
           and all are shorter at the N-terminus. The function of
           this subfamily is unknown.
          Length = 376

 Score = 29.3 bits (66), Expect = 2.1
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 162 DLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGI 220
             E +++ +     +  K+I+     ++ G I PI+EI +LA +      +D     G+
Sbjct: 126 SPERIKRAIK----TNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGV 180


>gnl|CDD|180248 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional.
          Length = 441

 Score = 29.1 bits (66), Expect = 2.2
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 13/69 (18%)

Query: 60  KHPKVIENAQRTFEKCGIGAGGTRNIAGTNYYH---VMLEKELATL---HGKKAALIFNS 113
            HPKV++  +   EK         + + T++Y+   V L + L  +     +K     NS
Sbjct: 71  AHPKVVKAVKEQAEKFL-------HYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNS 123

Query: 114 GYIANWATI 122
           G  +N A I
Sbjct: 124 GTESNEAAI 132


>gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon
           proteobacteria type.  Members of this family are the
           NifS-like cysteine desulfurase of the epsilon division
           of the Proteobacteria, similar to the NifS protein of
           nitrogen-fixing bacteria. Like NifS, and unlike IscS,
           this protein is found as part of a system of just two
           proteins, a cysteine desulfurase and a scaffold, for
           iron-sulfur cluster biosynthesis. This protein is called
           NifS by Olsen, et al. (PubMed:11123951), so we use this
           designation.
          Length = 382

 Score = 28.7 bits (64), Expect = 2.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 191 GDIAPIKEICDLADQYNAITYIDEVHAVG 219
           G I PIKEI ++  +   + + D V A+G
Sbjct: 154 GMIFPIKEIGEICKERGVLFHTDAVQAIG 182


>gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine
           aminocarboxypropyltransferase; Validated.
          Length = 427

 Score = 28.9 bits (65), Expect = 2.6
 Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 18/124 (14%)

Query: 88  TNYYHVMLEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFS-------DSHN 140
           TN  + +LE+ +A L G  AAL   SG+ A +    TL    D  I          +   
Sbjct: 61  TNPTNAVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFG 120

Query: 141 HASIIEGINKARCKKVIW-NHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEI 199
           HA       K+   +V W + +D    E+  A T  +  K I  ESI +  G +  I  I
Sbjct: 121 HAF------KSFGWQVRWADADDPASFER--AITPRT--KAIFIESIANPGGTVTDIAAI 170

Query: 200 CDLA 203
            ++A
Sbjct: 171 AEVA 174


>gnl|CDD|181481 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional.
          Length = 385

 Score = 28.5 bits (64), Expect = 3.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)

Query: 95  LEKELATLHGKKAALIFNSGYIA 117
           LE+ LA L G   AL FNSG  A
Sbjct: 58  LEEALAKLEGGVDALAFNSGMAA 80


>gnl|CDD|179960 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme GidA; Validated.
          Length = 618

 Score = 28.5 bits (65), Expect = 3.3
 Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 27/63 (42%)

Query: 275 FSTSLPPAIASASVTSIQYIKQHYDERKKYLERVK----------------QLRHSLENK 318
            STSLP  +    + SI             LE  +                QL+ +LE K
Sbjct: 309 ISTSLPEDVQLEMLRSI-----------PGLENAEILRPGYAIEYDYVDPRQLKPTLETK 357

Query: 319 AIP 321
            I 
Sbjct: 358 KIK 360


>gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase.  This model
           represents the pyridoxal phosphate-dependent glutamate
           (alpha) decarboxylase found in bacteria (low and hi-GC
           gram positive, proteobacteria and cyanobacteria),
           plants, fungi and at least one archaon (Methanosarcina).
           The product of the enzyme is gamma-aminobutyrate (GABA).
          Length = 431

 Score = 28.1 bits (63), Expect = 3.6
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 180 IIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIH 221
           + I  + Y   G+   +K + D  D+YNA T  D    + IH
Sbjct: 191 VCILGTTY--TGEYEDVKALNDALDEYNAKTGWD----IPIH 226


>gnl|CDD|178765 PLN03226, PLN03226, serine hydroxymethyltransferase; Provisional.
          Length = 475

 Score = 28.4 bits (64), Expect = 3.8
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 162 DLEDLEKNLAATDLSIPKIIIF-ESIYSMDGDIAPIKEICD 201
           D + LEK   A     PK+II   S Y  D D A +++I D
Sbjct: 171 DYDKLEKK--AMLFR-PKLIIAGASAYPRDWDYARMRKIAD 208


>gnl|CDD|185605 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
           Provisional.
          Length = 995

 Score = 28.1 bits (63), Expect = 4.0
 Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 23/133 (17%)

Query: 266 IRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPN 325
           IRS  +    +  +P            Y+     E  + +E  + L  +L       I +
Sbjct: 844 IRSLIA----TLGIPN-----KTKPDCYVTAKDAELIELIESAENLISTLAK-----IGS 889

Query: 326 ESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEH 385
            S I PI            +++  +  IY+    +  + K+  +L         +  +  
Sbjct: 890 VSVIPPIEEEAEVPKGCGFDVVDNKVIIYLNLDEFIDLKKELAKL---------EKKLAK 940

Query: 386 LVSSLENVWQKMN 398
           L  SLE+  +K++
Sbjct: 941 LQKSLESYLKKIS 953


>gnl|CDD|185441 PTZ00094, PTZ00094, serine hydroxymethyltransferase; Provisional.
          Length = 452

 Score = 28.0 bits (63), Expect = 4.3
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 162 DLEDLEKNLAATDLSIPKIIIF-ESIYSMDGDIAPIKEICD 201
           D + LE+         PK+II   S Y  D D    +EICD
Sbjct: 170 DYDKLEEL---AKAFRPKLIIAGASAYPRDIDYKRFREICD 207


>gnl|CDD|183710 PRK12737, gatY, tagatose-bisphosphate aldolase; Reviewed.
          Length = 284

 Score = 27.7 bits (62), Expect = 5.4
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 160 HNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICDLADQYNA 208
           H DL+D++K +      I  ++I  S  S + +IA +KE+ +   +Y+A
Sbjct: 84  HEDLDDIKKKV---RAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDA 129


>gnl|CDD|181321 PRK08248, PRK08248, O-acetylhomoserine
           aminocarboxypropyltransferase; Validated.
          Length = 431

 Score = 27.5 bits (61), Expect = 6.0
 Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 33/186 (17%)

Query: 36  AIHNSDE-----GSRKVTIWCSNDYLGMGKHPKVIENAQRTFEKCGIGAGGTRNIAGTNY 90
           AIH   E     GSR V I+ +  Y       +  E+A   F     G   TR +  T  
Sbjct: 13  AIHAGQEIDPTTGSRAVPIYQTTSYGF-----RDSEHAANLFSLKEFGNIYTRIMNPTTD 67

Query: 91  YHVMLEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSD---------SHNH 141
              + EK +A L G   AL  +SG  A   +I  + S  D I+  S          +H  
Sbjct: 68  ---VFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTL 124

Query: 142 ASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKIIIFESIYSMDGDIAPIKEICD 201
             +  GI     K V  + +D E+ E   A TD +  K +  E+I +  GD+  I+ +  
Sbjct: 125 PKL--GIT---VKFV--DPSDPENFEA--AITDKT--KALFAETIGNPKGDVLDIEAVAA 173

Query: 202 LADQYN 207
           +A ++ 
Sbjct: 174 IAHEHG 179


>gnl|CDD|162266 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH.
           HflB(FtsH) is a pleiotropic protein required for correct
           cell division in bacteria. It has ATP-dependent zinc
           metalloprotease activity. It was formerly designated
           cell division protein FtsH.
          Length = 495

 Score = 27.2 bits (61), Expect = 6.6
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 14/54 (25%)

Query: 209 ITYIDEVHAVGIHGSCGAGIS----EREGIMNRITIISGTLAK--GFGTFGGYI 256
           I +IDE+ AVG     GAG+     ERE  +N++      L +  GFGT  G I
Sbjct: 150 IIFIDEIDAVGRQR--GAGLGGGNDEREQTLNQL------LVEMDGFGTNTGVI 195


>gnl|CDD|181130 PRK07812, PRK07812, O-acetylhomoserine
           aminocarboxypropyltransferase; Validated.
          Length = 436

 Score = 27.4 bits (61), Expect = 6.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 95  LEKELATLHGKKAALIFNSGYIANWATIGTLCSQIDNII 133
           +E+ +A L G  AAL+  SG  A    I  L    D+I+
Sbjct: 74  VEQRIAALEGGVAALLLASGQAAETFAILNLAGAGDHIV 112


>gnl|CDD|150253 pfam09515, Thia_YuaJ, Thiamine transporter protein (Thia_YuaJ).
           Members of this protein family have been assigned as
           thiamine transporters by a phylogenetic analysis of
           families of genes regulated by the THI element, a
           broadly conserved RNA secondary structure element
           through which thiamine pyrophosphate (TPP) levels can
           regulate transcription of many genes related to thiamine
           transport, salvage, and de novo biosynthesis. Species
           with this protein always lack the ThiBPQ ABC
           transporter. In some species (e.g. Streptococcus mutans
           and Streptococcus pyogenes), yuaJ is the only
           THI-regulated gene. Evidence from Bacillus cereus
           indicates thiamine uptake is coupled to proton
           translocation.
          Length = 173

 Score = 27.2 bits (61), Expect = 8.5
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 13/77 (16%)

Query: 217 AVGIHGSCGAGISEREGIMNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFS 276
           A+G+ G     + +       + II G +    G+F  Y       C FI    +G IF 
Sbjct: 82  ALGLAGLFAKKVRQNNKKKALLYIILGII---IGSFARY------FCHFI----AGVIFW 128

Query: 277 TSLPPAIASASVTSIQY 293
            S  P   S  + S+ Y
Sbjct: 129 GSYAPKGMSPWLYSLVY 145


>gnl|CDD|162958 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit
           clpA. 
          Length = 731

 Score = 26.9 bits (60), Expect = 9.3
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 19/85 (22%)

Query: 177 IPKIIIFESIYSMD-----------GDI-APIKEIC-DLADQYNAITYIDEVHAVGIHGS 223
           +P+ +    IYS+D           GD    +K +  ++  + NAI +IDE+H +     
Sbjct: 232 VPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTI----- 286

Query: 224 CGAGISEREGIMNRITIISGTLAKG 248
            GAG +   G M+   ++   L+ G
Sbjct: 287 VGAG-ATSGGSMDASNLLKPALSSG 310


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0721    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,634,818
Number of extensions: 429688
Number of successful extensions: 959
Number of sequences better than 10.0: 1
Number of HSP's gapped: 909
Number of HSP's successfully gapped: 67
Length of query: 401
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 305
Effective length of database: 3,920,105
Effective search space: 1195632025
Effective search space used: 1195632025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)