BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase [Candidatus Liberibacter asiaticus str. psy62] (401 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 401 Score = 835 bits (2157), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/401 (100%), Positives = 401/401 (100%) Query: 1 MDFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDYLGMGK 60 MDFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDYLGMGK Sbjct: 1 MDFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDYLGMGK 60 Query: 61 HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWA 120 HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWA Sbjct: 61 HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWA 120 Query: 121 TIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKI 180 TIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKI Sbjct: 121 TIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKI 180 Query: 181 IIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITI 240 IIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITI Sbjct: 181 IIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITI 240 Query: 241 ISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDE 300 ISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDE Sbjct: 241 ISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDE 300 Query: 301 RKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINY 360 RKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINY Sbjct: 301 RKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINY 360 Query: 361 PTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKMNRYA 401 PTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKMNRYA Sbjct: 361 PTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKMNRYA 401 >gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 381 Score = 161 bits (407), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 111/341 (32%), Positives = 178/341 (52%), Gaps = 20/341 (5%) Query: 45 RKVTIW--CSNDYLGMGKHPKVIENAQRTFE-KCGIGAGGTRNIAGTNYYHVMLEKELAT 101 R+ IW S+DYL + + E + + K IG+GG+R + G H+ LE+E A Sbjct: 27 RRQDIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAAD 86 Query: 102 LHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHN 161 G + L F SGY AN A + TL D I+ D HASI EGIN + + + HN Sbjct: 87 FFGFEKMLYFGSGYAANMAILSTLPQATDLIVY--DKLVHASIREGINSGKAQAIAIPHN 144 Query: 162 DLEDLEKNLAATDLSIPK---IIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAV 218 ++ +N+ S K I+ ESIYSMDGD AP+ ++ +A+ Y+ +DE HA Sbjct: 145 NINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHAT 204 Query: 219 GIHGSCGAG----ISEREGIMNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFI 274 G+ G G G I ER + I+ + +K G+ G + +++ + D++ ++A FI Sbjct: 205 GVCGPLGKGLTHIIEERNNV-----IVMHSCSKALGSSGALVGSNKIIYDYLINYAKPFI 259 Query: 275 FSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMV 334 ++TS P +A + +++ IK+ K L+ + + + NK I ++SHI I++ Sbjct: 260 YTTSPSPILAVVACEALKLIKRKPALHKSLLQLI-NITDKIANKKI-GFSSQSHIQSIVI 317 Query: 335 GDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLT 375 GD+ C I+ L K+ G I+ I PTV RLR+++T Sbjct: 318 GDNKSCLNIAKNLQKK-GFDIRAIRPPTVPINTARLRISIT 357 >gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 798 Score = 32.0 bits (71), Expect = 0.018, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 26/174 (14%) Query: 173 TDLSIPKIIIFESIYSMD-----------GDIAP-IKEICDLADQY-NAITYIDEVHAVG 219 D +P I++ I+S+D GD IK+I + Y NAI YIDE+H + Sbjct: 250 VDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLV 309 Query: 220 IHGSCGAGISEREGIMNRITIISGTL-AKGFGTFGGYIAASENLCDFIRSFASGFIFSTS 278 GS +GIS + + + SG + G T+ Y E +R F + S Sbjct: 310 GAGSA-SGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPS 368 Query: 279 LPPAIASASVTSIQ-YIKQHYDER--KKYLERVKQL--RH----SLENKAIPCI 323 + AI V I+ Y ++H+ R K+ + QL RH L +KAI I Sbjct: 369 IEDAI--EIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVI 420 >gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] Length = 647 Score = 28.1 bits (61), Expect = 0.25, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Query: 209 ITYIDEVHAVGIHG--SCGAGISEREGIMNRITI 240 I ++DE+ AVG H G G ERE +N++ + Sbjct: 243 IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLV 276 >gi|255764506|ref|YP_003065297.2| GTP cyclohydrolase I [Candidatus Liberibacter asiaticus str. psy62] Length = 205 Score = 26.6 bits (57), Expect = 0.73, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 22/42 (52%) Query: 352 GIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENV 393 G++ + PTV + KE +RV L + D D E L + + V Sbjct: 7 GVFNMKLKKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRV 48 >gi|254781062|ref|YP_003065475.1| putative aminotransferase involved in iron-sulfur cluster biogenesis [Candidatus Liberibacter asiaticus str. psy62] Length = 406 Score = 26.6 bits (57), Expect = 0.85, Method: Compositional matrix adjust. Identities = 12/35 (34%), Positives = 20/35 (57%) Query: 179 KIIIFESIYSMDGDIAPIKEICDLADQYNAITYID 213 K+I + ++ G + PIKEIC +A + N +D Sbjct: 166 KLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200 >gi|254780777|ref|YP_003065190.1| uridylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 242 Score = 24.6 bits (52), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 12/81 (14%) Query: 149 NKARCKKVIWNHNDLEDLEKNLAATDLSIPKI----IIFESIYSMDGDIAPIKEICDLAD 204 N C++ + + N A DL++ KI +I SI+ + ++C++ Sbjct: 67 NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIF--------MPQVCEVFS 118 Query: 205 QYNAITYIDEVHAVGIHGSCG 225 NA++Y+ + V G G Sbjct: 119 CRNAVSYLSQGKVVIFSGGTG 139 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.137 0.412 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 273,471 Number of Sequences: 1233 Number of extensions: 11763 Number of successful extensions: 40 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 9 length of query: 401 length of database: 328,796 effective HSP length: 76 effective length of query: 325 effective length of database: 235,088 effective search space: 76403600 effective search space used: 76403600 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)