BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase
[Candidatus Liberibacter asiaticus str. psy62]
         (401 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 401

 Score =  835 bits (2157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/401 (100%), Positives = 401/401 (100%)

Query: 1   MDFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDYLGMGK 60
           MDFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDYLGMGK
Sbjct: 1   MDFEKFFKDQINYLHHEKRYRFFTELAYEQYQFPYAIHNSDEGSRKVTIWCSNDYLGMGK 60

Query: 61  HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWA 120
           HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWA
Sbjct: 61  HPKVIENAQRTFEKCGIGAGGTRNIAGTNYYHVMLEKELATLHGKKAALIFNSGYIANWA 120

Query: 121 TIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKI 180
           TIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKI
Sbjct: 121 TIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHNDLEDLEKNLAATDLSIPKI 180

Query: 181 IIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITI 240
           IIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITI
Sbjct: 181 IIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAVGIHGSCGAGISEREGIMNRITI 240

Query: 241 ISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDE 300
           ISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDE
Sbjct: 241 ISGTLAKGFGTFGGYIAASENLCDFIRSFASGFIFSTSLPPAIASASVTSIQYIKQHYDE 300

Query: 301 RKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINY 360
           RKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINY
Sbjct: 301 RKKYLERVKQLRHSLENKAIPCIPNESHIIPIMVGDSHKCTQISNILLKEFGIYIQPINY 360

Query: 361 PTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKMNRYA 401
           PTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKMNRYA
Sbjct: 361 PTVAKKKERLRVTLTPLHTDSDIEHLVSSLENVWQKMNRYA 401


>gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 381

 Score =  161 bits (407), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 178/341 (52%), Gaps = 20/341 (5%)

Query: 45  RKVTIW--CSNDYLGMGKHPKVIENAQRTFE-KCGIGAGGTRNIAGTNYYHVMLEKELAT 101
           R+  IW   S+DYL +     + E    + + K  IG+GG+R + G    H+ LE+E A 
Sbjct: 27  RRQDIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAAD 86

Query: 102 LHGKKAALIFNSGYIANWATIGTLCSQIDNIICFSDSHNHASIIEGINKARCKKVIWNHN 161
             G +  L F SGY AN A + TL    D I+   D   HASI EGIN  + + +   HN
Sbjct: 87  FFGFEKMLYFGSGYAANMAILSTLPQATDLIVY--DKLVHASIREGINSGKAQAIAIPHN 144

Query: 162 DLEDLEKNLAATDLSIPK---IIIFESIYSMDGDIAPIKEICDLADQYNAITYIDEVHAV 218
           ++    +N+     S  K    I+ ESIYSMDGD AP+ ++  +A+ Y+    +DE HA 
Sbjct: 145 NINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHAT 204

Query: 219 GIHGSCGAG----ISEREGIMNRITIISGTLAKGFGTFGGYIAASENLCDFIRSFASGFI 274
           G+ G  G G    I ER  +     I+  + +K  G+ G  + +++ + D++ ++A  FI
Sbjct: 205 GVCGPLGKGLTHIIEERNNV-----IVMHSCSKALGSSGALVGSNKIIYDYLINYAKPFI 259

Query: 275 FSTSLPPAIASASVTSIQYIKQHYDERKKYLERVKQLRHSLENKAIPCIPNESHIIPIMV 334
           ++TS  P +A  +  +++ IK+     K  L+ +  +   + NK I    ++SHI  I++
Sbjct: 260 YTTSPSPILAVVACEALKLIKRKPALHKSLLQLI-NITDKIANKKI-GFSSQSHIQSIVI 317

Query: 335 GDSHKCTQISNILLKEFGIYIQPINYPTVAKKKERLRVTLT 375
           GD+  C  I+  L K+ G  I+ I  PTV     RLR+++T
Sbjct: 318 GDNKSCLNIAKNLQKK-GFDIRAIRPPTVPINTARLRISIT 357


>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 798

 Score = 32.0 bits (71), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 26/174 (14%)

Query: 173 TDLSIPKIIIFESIYSMD-----------GDIAP-IKEICDLADQY-NAITYIDEVHAVG 219
            D  +P I++   I+S+D           GD    IK+I    + Y NAI YIDE+H + 
Sbjct: 250 VDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLV 309

Query: 220 IHGSCGAGISEREGIMNRITIISGTL-AKGFGTFGGYIAASENLCDFIRSFASGFIFSTS 278
             GS  +GIS     + +  + SG +   G  T+  Y    E     +R F    +   S
Sbjct: 310 GAGSA-SGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPS 368

Query: 279 LPPAIASASVTSIQ-YIKQHYDER--KKYLERVKQL--RH----SLENKAIPCI 323
           +  AI    V  I+ Y ++H+  R  K+ +    QL  RH     L +KAI  I
Sbjct: 369 IEDAI--EIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVI 420


>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
          Length = 647

 Score = 28.1 bits (61), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 209 ITYIDEVHAVGIHG--SCGAGISEREGIMNRITI 240
           I ++DE+ AVG H     G G  ERE  +N++ +
Sbjct: 243 IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLV 276


>gi|255764506|ref|YP_003065297.2| GTP cyclohydrolase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 205

 Score = 26.6 bits (57), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 352 GIYIQPINYPTVAKKKERLRVTLTPLHTDSDIEHLVSSLENV 393
           G++   +  PTV + KE +RV L  +  D D E L  + + V
Sbjct: 7   GVFNMKLKKPTVEEAKEAIRVILRWIGDDPDREGLKDTPDRV 48


>gi|254781062|ref|YP_003065475.1| putative aminotransferase involved in iron-sulfur cluster
           biogenesis [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 406

 Score = 26.6 bits (57), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 179 KIIIFESIYSMDGDIAPIKEICDLADQYNAITYID 213
           K+I    + ++ G + PIKEIC +A + N    +D
Sbjct: 166 KLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200


>gi|254780777|ref|YP_003065190.1| uridylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 242

 Score = 24.6 bits (52), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 12/81 (14%)

Query: 149 NKARCKKVIWNHNDLEDLEKNLAATDLSIPKI----IIFESIYSMDGDIAPIKEICDLAD 204
           N   C++   +   +     N  A DL++ KI    +I  SI+        + ++C++  
Sbjct: 67  NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIF--------MPQVCEVFS 118

Query: 205 QYNAITYIDEVHAVGIHGSCG 225
             NA++Y+ +   V   G  G
Sbjct: 119 CRNAVSYLSQGKVVIFSGGTG 139


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.137    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 273,471
Number of Sequences: 1233
Number of extensions: 11763
Number of successful extensions: 40
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 9
length of query: 401
length of database: 328,796
effective HSP length: 76
effective length of query: 325
effective length of database: 235,088
effective search space: 76403600
effective search space used: 76403600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)