HHsearch results for GI: 254780605 and protein with PDBid: 3biq_A
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, activator, chromosomal protein, coiled coil, DNA damage; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A*
Probab=100.00 E-value=0 Score=435.04 Aligned_cols=375 Identities=14% Similarity=0.159 Sum_probs=268.1
Q ss_pred CCHHHHHHHHHHHHCCC--CCEEEEECCC----CCH--------HHHHHCCCCCCCCCCHHHHHHHHCCCCCCEEECCCC
Q ss_conf 77388999999860233--4306760284----202--------344320135537787002332201478620003531
Q gi|254780605|r 177 RESQEKIRDICKILHQK--EVGAVFICDP----SSI--------AWIFNIRGFDIPCSPYPLSRAILYADGKAEIFFDKQ 242 (609)
Q Consensus 177 ~s~~eKi~~ir~~L~~~--~~daliit~~----d~I--------aWLlNiRG~Di~~tPv~~a~aiI~~~~~~~Lfvd~~ 242 (609)
+.+.+|+++|++.|+++ ++|+++|..+ |+. .||| |.+.|- +.+++..+ .+.++++.+
T Consensus 11 ~~f~~Rl~~l~~~~~~~~~~~dal~i~~g~~~~d~~Y~~~~~~~~yLt---G~~~p~-----t~lvl~~~-~~~il~~~~ 81 (467)
T 3biq_A 11 DVFKKRIELLYSKYNEFEGSPNSLLFVLGSSNAENPYQKTTILHNWLL---SYEFPA-----TLIALVPG-KVIIITSSA 81 (467)
T ss_dssp HHHHHHHHHHHHHGGGSTTCCSEEEEEECSCCTTSTTCHHHHHHHHHH---SSCCSS-----EEEEEETT-EEEEEEEHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCEECC---CCCCCC-----EEEEECCC-EEEEEECCC
T ss_conf 999999999999877404699989998289987734402687715326---888776-----79998189-089995798
Q ss_pred CCC---HHHHHHH---CCC-CEEECH---------HHHHHHHHHCCCCCCEEEECC-CCCCH--------HHHHHHHHCC
Q ss_conf 121---5678741---256-357074---------451577863013574289725-31778--------8975312139
Q gi|254780605|r 243 YIN---EQLKALL---SAV-AIVLDM---------DMMDSRLVCLARTSMPILIDP-KWISY--------RFFKVIAQKN 297 (609)
Q Consensus 243 k~~---~~~~~~l---~~~-~~~~~~---------~~~~~~l~~l~~~~~~i~id~-~~~s~--------~~~~~l~~~~ 297 (609)
+.. +.....- ... ..+..+ ..+...+..+...+..+++.. +.... .+...+...+
T Consensus 82 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~d~~~g~~~~~~~~~~~~~~~~~~ 161 (467)
T 3biq_A 82 KAKHLQKAIDLFKDPESKITLELWQRNNKEPELNKKLFDDVIALINSAGKTVGIPEKDSYQGKFMTEWNPVWEAAVKENE 161 (467)
T ss_dssp HHHHHHHHHGGGCC--CCCEEEEEEECTTCHHHHHHHHHHHHHHHHHHCSEEEECTTCCCCSHHHHHHHHHHHHHHHHHT
T ss_pred CCEEECCCCHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 65122242034440113862589980477421299999999999744796899943422057788999999998665279
Q ss_pred CEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHH---------
Q ss_conf 567515432115666199999987999984438999999875332100--124530188999999987543---------
Q gi|254780605|r 298 GVMVEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSL--ETITEIDIIKKLERCREEIGC--------- 366 (609)
Q Consensus 298 ~~~i~~~~pI~~lRaiKn~~EI~~mr~Ahi~DgvAl~kfl~wL~~~~~--~~iTE~~ia~~Le~~R~~~~~--------- 366 (609)
..++.....+..+|+||++.||+.||+|......||.+++.+++..+. ..++|.++++.++....+.+.
T Consensus 162 ~~~vd~~~~l~~lR~vKs~~Ei~~ir~A~~i~~~~~~~~~~~i~~gi~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~ 241 (467)
T 3biq_A 162 FNVIDISLGLSKVWEVKDVNEQAFLSVSSKGSDKFMDLLSNEMVRAVDEELKITNAKLSDKIENKIDDVKFLKQLSPDLS 241 (467)
T ss_dssp CEEEECHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBHHHHHHHHHHGGGCHHHHHHHHHHHH
T ss_pred CEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 82887589999999629999999999999999999999998765554355664699999999999986323320230110
Q ss_pred -------HHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEEECCCCEEEEECCCCEECCCCCCEEEEEECCCCHHHHH
Q ss_conf -------30278555541000012335432-2224554332050389879983032010561222143210378888843
Q gi|254780605|r 367 -------KMRNPLRDIAFNTIAASGPHAAI-IHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVDYEKKY 438 (609)
Q Consensus 367 -------~~~~~~~~~SF~TIva~G~N~Ai-pHY~~~~~s~~~i~~~~~~LiDsG~qY~~GtTDiTRT~~~G~~~~e~k~ 438 (609)
....+..++||+|||++|+|+|+ |||.+ ++++|++|+++|+|+|+.|.+|||||||||++ .|+++|++
T Consensus 242 ~~~~~~~~~~~~~~~~~y~~IvasG~n~~~~~h~~~---~~~~l~~gd~vlvD~G~~y~gY~sDitRT~~v-~~~~~~~~ 317 (467)
T 3biq_A 242 ALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARS---TNDQLYGNGCILASCGIRYNNYCSNITRTFLI-DPSEEMAN 317 (467)
T ss_dssp TTSCTTCCCCGGGEEESSCCEEECTTCCCCSTTCCC---CSSBCCCSEEEEEEECEEETTEECCEEEEEEE-SCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCEEEEEECEEECCCCCCCEEEEEE-ECCHHHHH
T ss_conf 023432223678777665751156776565677689---98632459989998355999561574379985-07589999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC----CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEECCCCE
Q ss_conf 336677888889972178978888999987366774186----547764323211356077886237-789860056987
Q gi|254780605|r 439 YFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWKYGA----DFAHGVGHGVGSFLPVHEGPQGIS-RTNQEPLLPGMI 513 (609)
Q Consensus 439 ~yt~VLk~~ial~~a~fp~g~~g~~lD~~aR~~l~~~g~----dy~HgtGHGVG~~l~VHE~P~~is-~~~~~~l~~Gmv 513 (609)
.|..|++++.+...+..++|+++.++|..||++|.++|. .|.|+|||||| |+|||.|..++ +++..+|+||||
T Consensus 318 ~y~~v~~~~~~~~~~~~kpG~~~~~v~~~~~~~i~~~g~~~~~~f~h~~GHgiG--l~~hE~p~~~~~~~~~~~L~~GMv 395 (467)
T 3biq_A 318 NYDFLLTLQKEIVTNILKPGRTPKEVYESVIEYIEKTKPELVPNFTKNIGSLIG--LEFRDSNFILNVKNDYRKIQRGDC 395 (467)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGGGGBCSCCEEECS--SSSCCGGGBSSTTCCSCCCCTTCE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCEECCCCE
T ss_conf 999999999999999976399599999999999997294544329999878257--866799986688999888799999
Q ss_pred EEECCCEEE------CCCCCEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCHHCCCHHHCCHHH
Q ss_conf 884686035------6875215002599972787787766424221011653001107867789999
Q gi|254780605|r 514 LSNEPGYYR------CGAFGIRIENVLCVSEPETINNGECLMLGFNTLTLCPIDRKLILVELLTNEE 574 (609)
Q Consensus 514 ~s~EPG~Y~------~g~~GiRIEn~v~v~~~~~~~~~~~~fl~Fe~lT~vP~~~~li~~~ll~~~e 574 (609)
||+|||||. ++.|||||||+|+||+.+.. .-+-+|-+|-+.+-|...|-.++|
T Consensus 396 ~tiepGiy~~~~~~~~~~~girieD~vlvt~~g~~--------~~~llt~~pk~~~~I~~~~~~~~~ 454 (467)
T 3biq_A 396 FNISFGFNNLKDSQSANNYALQLADTVQIPLDETE--------PPRFLTNYTKAKSQISFYFNNEEE 454 (467)
T ss_dssp EEEEEEEEEECCSSCSSCEEEEEEEEEECCSSTTS--------CCEESCCSCCCHHHHEECC-----
T ss_pred EEECCEECCCCCCCCCCCEEEEECCEEEEECCCCC--------CCEECCCCCCCHHHHHHHHCCCCC
T ss_conf 99838556688887668628995127999429985--------616886799539997456468566