HHsearch results for GI: 254780605 and protein with PDBid: 3biq_A

>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, activator, chromosomal protein, coiled coil, DNA damage; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A*
Probab=97.04  E-value=0.017  Score=35.80  Aligned_cols=141  Identities=12%  Similarity=0.157  Sum_probs=80.6

Q ss_pred             CHHHHHHHHHHHHHHC--CCCEEEEE--CCCCCCCCCCCCHHCHHHHHHCCCCCCEEEEEECCCCEEEECCHH---HHHH
Q ss_conf             5589999999999974--99799960--888747860667106100441467650077895783679978814---8999
Q gi|254780605|r   13 KTFERVHNLRSCFDSL--GMDAFLVP--RVDEYRGEFVDKGSERLAWLSGFTGSAGIAIVLRQKSVIFVDGRY---TLQV   85 (609)
Q Consensus        13 ~~~erL~~LR~~m~~~--~idayiip--~~D~h~sEyv~~~~~rl~~isGFtGSaG~aiIt~~~a~L~tDgRY---~lQA   85 (609)
                      .=.+||++||+.|+++  ++|+.+|-  ++|.- +-|. ....-..|+|||.......|++.+..++.++++.   +.++
T Consensus        12 ~f~~Rl~~l~~~~~~~~~~~dal~i~~g~~~~d-~~Y~-~~~~~~~yLtG~~~p~t~lvl~~~~~~il~~~~k~~~~~~~   89 (467)
T 3biq_A           12 VFKKRIELLYSKYNEFEGSPNSLLFVLGSSNAE-NPYQ-KTTILHNWLLSYEFPATLIALVPGKVIIITSSAKAKHLQKA   89 (467)
T ss_dssp             HHHHHHHHHHHHGGGSTTCCSEEEEEECSCCTT-STTC-HHHHHHHHHHSSCCSSEEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC-CCCC-CCCCCCEECCCCCCCCEEEEECCCEEEEEECCCCCEEECCC
T ss_conf             999999999998774046999899982899877-3440-26877153268887767999818908999579865122242


Q ss_pred             HHHHCCC----CEEEEECCCCCHH-------HHHHHHCCCCCEEEECCEE-CC---HHH-HHHHHHHHHHCCCEEEECCC
Q ss_conf             9861967----1799866899999-------9888743799889965634-13---999-99999985334761997050
Q gi|254780605|r   86 EKEVDTA----LFTIKNIAIEPLH-------AWISEHGFVGLRLGLDSRL-HS---SFE-VDLLQKSLDKIEGVIVDVPY  149 (609)
Q Consensus        86 ~~el~~~----~~~~~~~~~~~~~-------~wl~~~~~~g~~IG~Dp~l-~s---~~~-~~~l~~~l~~~~~~l~~~~~  149 (609)
                      .......    ...+.........       .++..-...+.++|...+- .+   ... ...+...+...++.++.+. 
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~vd~~-  168 (467)
T 3biq_A           90 IDLFKDPESKITLELWQRNNKEPELNKKLFDDVIALINSAGKTVGIPEKDSYQGKFMTEWNPVWEAAVKENEFNVIDIS-  168 (467)
T ss_dssp             HGGGCC--CCCEEEEEEECTTCHHHHHHHHHHHHHHHHHHCSEEEECTTCCCCSHHHHHHHHHHHHHHHHHTCEEEECH-
T ss_pred             CHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEECH-
T ss_conf             0344401138625899804774212999999999997447968999434220577889999999986652798288758-


Q ss_pred             HHHHHHH
Q ss_conf             0111220
Q gi|254780605|r  150 NPIDSLW  156 (609)
Q Consensus       150 NlVD~iW  156 (609)
                      .+|+.+.
T Consensus       169 ~~l~~lR  175 (467)
T 3biq_A          169 LGLSKVW  175 (467)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
T ss_conf             9999999