HHsearch results for GI: 254780605 and protein with PDBid: 3cb6_A
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H3/H4 chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Probab=100.00 E-value=0 Score=420.25 Aligned_cols=363 Identities=13% Similarity=0.164 Sum_probs=260.6
Q ss_pred CCHHHHHHHHHHHHCCC--------CCEEEEECCC----CCH--------HHHHHCCCCCCCCCCHHHHHHHHCCCCCCE
Q ss_conf 77388999999860233--------4306760284----202--------344320135537787002332201478620
Q gi|254780605|r 177 RESQEKIRDICKILHQK--------EVGAVFICDP----SSI--------AWIFNIRGFDIPCSPYPLSRAILYADGKAE 236 (609)
Q Consensus 177 ~s~~eKi~~ir~~L~~~--------~~daliit~~----d~I--------aWLlNiRG~Di~~tPv~~a~aiI~~~~~~~ 236 (609)
..+..||++|++.+++. ++|++++... |+. .||| |.+.|-| .++++++ +++
T Consensus 11 ~~F~~Rl~~l~~~~~~~~~~~~~~~~~d~i~~~~g~~~~~~~y~k~~~~~~wL~---G~e~pdt-----~lvl~~~-~~~ 81 (444)
T 3cb6_A 11 ITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTALHTWLL---GYEFPST-----LILLEKH-RIT 81 (444)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHTSTTCSEEEEEECSCCTTCCCCHHHHHHHHHH---SSCCSSE-----EEEEETT-EEE
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEECCCCCCCCCCEECCHHHEHHH---CCCCCCE-----EEEECCC-CEE
T ss_conf 999999999999976345640344389989994388776764211220101231---7877566-----9998389-389
Q ss_pred EECCCCCCC--HHHHHHHCCC---CEEE---CH----HHHHHHHHHCCCCCCEEEECC-CCCCH----HHHHHHHH--CC
Q ss_conf 003531121--5678741256---3570---74----451577863013574289725-31778----89753121--39
Q gi|254780605|r 237 IFFDKQYIN--EQLKALLSAV---AIVL---DM----DMMDSRLVCLARTSMPILIDP-KWISY----RFFKVIAQ--KN 297 (609)
Q Consensus 237 Lfvd~~k~~--~~~~~~l~~~---~~~~---~~----~~~~~~l~~l~~~~~~i~id~-~~~s~----~~~~~l~~--~~ 297 (609)
+++...|.. ..+....... .++. +. ..+...+..+...+.++++-. +...- .+...+.. .+
T Consensus 82 ~l~~~kk~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~i~~~~~~vG~~~kd~~~g~~~~~~~~~l~~~~~~ 161 (444)
T 3cb6_A 82 ILTSVNKANMLTKLAETKGAAADVNILKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGKFINEWDSIFEPVKSE 161 (444)
T ss_dssp EEEEHHHHTTTHHHHTCTTCSSEEEEEEECSCHHHHHHHHHHHHHHHHTTTSEEEECTTCCCCSHHHHHHHHHHTTTGGG
T ss_pred EEECCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 98167368888877521256887489970466422577999999997632660899713355545799999999860599
Q ss_pred CEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--CCCCCCCHHHHHHHHHHHHHHHH-------
Q ss_conf 567515432115666199999987999984438999999-87533210--01245301889999999875433-------
Q gi|254780605|r 298 GVMVEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYF-LFWFYSQS--LETITEIDIIKKLERCREEIGCK------- 367 (609)
Q Consensus 298 ~~~i~~~~pI~~lRaiKn~~EI~~mr~Ahi~DgvAl~kf-l~wL~~~~--~~~iTE~~ia~~Le~~R~~~~~~------- 367 (609)
..++....++..+|+||++.||+.||+|......||.++ ..|++..+ ..++||.+++++++......+..
T Consensus 162 ~~~vD~s~~l~~lR~iKs~~EI~~mr~Aa~i~~~~~~~~~~~~i~~~i~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ 241 (444)
T 3cb6_A 162 FNLVDASLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQTKSLKL 241 (444)
T ss_dssp SEEEECHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCBHHHHHHHHHGGGGCHHHHTCGGGCC
T ss_pred CEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 85996789999998569999999999999989999999999999997502676019999999999998614566544202
Q ss_pred --HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCEECCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf --027855554100001233543222245543320503898799830320105612221432103788888433366778
Q gi|254780605|r 368 --MRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLK 445 (609)
Q Consensus 368 --~~~~~~~~SF~TIva~G~N~AipHY~~~~~s~~~i~~~~~~LiDsG~qY~~GtTDiTRT~~~G~~~~e~k~~yt~VLk 445 (609)
...+..++||+||+++|+|++++||.+ +++.+..||++|+|+|++|.+||||+||||++| |+++|+++|+.|++
T Consensus 242 ~~~~~~~~~~~y~piv~sG~~~~~~h~~~---s~~~~~~gd~vlid~G~~y~gY~sditRT~~v~-ps~e~~~~y~~~~~ 317 (444)
T 3cb6_A 242 GDIDLDQLEWCYTPIIQSGGSYDLKPSAI---TDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFD-PDSEQQKNYSFLVA 317 (444)
T ss_dssp TTCCGGGEEESSCCEEECTTCCCCSTTCC---CCSSBCCSSEEEEEECEEETTEECCEEEEEEES-CCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCC---CCCCCCCCCEEEEEEEECCCCEEEECCCCCCCC-CCHHHHHHHHHHHH
T ss_conf 56577766566686544468666777889---987213588799998131088865411035678-86899999999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC--C--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEECCCE-
Q ss_conf 8888997217897888899998736677418--6--5477643232113560778862377898600569878846860-
Q gi|254780605|r 446 GMISVSTARFPQRTRGCDLDSIARIFLWKYG--A--DFAHGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPGY- 520 (609)
Q Consensus 446 ~~ial~~a~fp~g~~g~~lD~~aR~~l~~~g--~--dy~HgtGHGVG~~l~VHE~P~~is~~~~~~l~~Gmv~s~EPG~- 520 (609)
+|.++..+..| |+++.+++..+|+++.+.+ + .|.|++||||| |++||.|..+++.++.+|++|||||+|||+
T Consensus 318 ~~~~~i~~lkp-G~~~~~v~~~~~~~i~~~~~~~~~~~~h~~GHgiG--l~~hE~p~~~~~~~~~~l~~GMv~~iepGi~ 394 (444)
T 3cb6_A 318 LQKKLFEYCRD-GAVIGDIYTKILGLIRAKRPDLEPNFVRNLGAGIG--IEFRESSLLVNAKNPRVLQAGMTLNLSIGFG 394 (444)
T ss_dssp HHHHHHHHCST-TCBHHHHHHHHHHHHHHHCGGGGGGBCSCCEEECS--SSSCBGGGCCSTTCCCBCCTTCEEEEEEEEE
T ss_pred HHHHHHHHCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCEECCCCEEEECCCCC
T ss_conf 99987864479-99089987999999998377730368998255278--8778998766899998889997999868536
Q ss_pred ---------EECCCCCEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCHHCCC
Q ss_conf ---------3568752150025999727877877664242210116530011078
Q gi|254780605|r 521 ---------YRCGAFGIRIENVLCVSEPETINNGECLMLGFNTLTLCPIDRKLIL 566 (609)
Q Consensus 521 ---------Y~~g~~GiRIEn~v~v~~~~~~~~~~~~fl~Fe~lT~vP~~~~li~ 566 (609)
|.+|.|||||||+|+||+. +.|.||-+|-+.+-|.
T Consensus 395 ~l~~~~~~~~~~~~~gi~ieDtv~Vt~~-----------g~e~LT~~pk~~~~i~ 438 (444)
T 3cb6_A 395 NLINPHPKNSQSKEYALLLIDTIQITRS-----------DPIVFTDSPKAQGDIS 438 (444)
T ss_dssp EEECSSCCTTSCSEEEEEEEEEEECCSS-----------SCEETTCCCCSHHHHE
T ss_pred CCCCCCCCCCCCCCEEEEEEEEEEECCC-----------CCEECCCCCCCHHHCC
T ss_conf 6666666644167147999889999799-----------4776989999778827