RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780605|ref|YP_003065018.1| putative aminopeptidase
[Candidatus Liberibacter asiaticus str. psy62]
(609 letters)
>gnl|CDD|37624 KOG2413, KOG2413, KOG2413, Xaa-Pro aminopeptidase [Amino acid
transport and metabolism].
Length = 606
Score = 458 bits (1181), Expect = e-129
Identities = 223/602 (37%), Positives = 342/602 (56%), Gaps = 23/602 (3%)
Query: 21 LRSCFDSLGMDAFLVPRVDEYRGEFVDKGSERLAWLSGFTGSAGIAIVLRQKSVIFVDGR 80
LR S +DA+++P D ++ E++ ER A+LSGF+GSAG A++ +++ ++ DGR
Sbjct: 15 LRELMKSPPIDAYILPSTDAHQSEYIADRDERRAFLSGFSGSAGTAVITEEEAALWTDGR 74
Query: 81 YTLQVEKEVDTALFTIK-NIAIEPLHAWISEHGFVGLRLGLDSRLHSSFEVDLLQKSLDK 139
Y Q E+++D+ +K + + W+++ G R+G+D L S L+KSL
Sbjct: 75 YFQQAEQQLDSNWTLMKMGEDVPTVEEWLAKVLPEGSRVGIDPTLISFDAWKQLEKSLTS 134
Query: 140 IEGVIVDVPYNPIDSLWKDRPQRLYRKVAMQDMAYAGRESQEKIRDICKILHQKEVGAVF 199
+V +P N +D +W DRP+R V + D+ +AG +K+ ++ K L +K+ A
Sbjct: 135 KGLELVPIPGNLVDEIWGDRPERPGNPVIVLDLEFAGLSVDDKVDNLRKKLKEKKCDAFV 194
Query: 200 ICDPSSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEIFFDKQYINEQLKALLSAVAI-V 258
+ IAW+ N+RG DIP +P S AI+ D + +F D ++++ K L + +
Sbjct: 195 VTALDEIAWLLNLRGSDIPYNPVFYSYAIITMD-EIFLFVDNSKLSDESKKHLREDGVEI 253
Query: 259 LDMDMM--DSRLVCLARTSMPILIDPKWISYRFFKVIAQKNGVMVEGSDPSCLLRATKNK 316
D + D + A I I P+ +Y ++I + + M++ S P +A KN
Sbjct: 254 RPYDQIWSDIKNWASAFADKKIWISPE-TNYGIGELIGEDH-SMIDPS-PISRAKAIKND 310
Query: 317 VEIEGMQTAHIQDGVAMVYFLFWF--YSQSLETITEIDIIKKLERCREEIGCKMRNPLRD 374
E++GM+ +HI+DG A+V + W TITE D KLE R ++
Sbjct: 311 DELKGMRNSHIRDGAALVEYFAWLEKELHKGYTITEYDAADKLEEFR-----SRQDHFMG 365
Query: 375 IAFNTIAAS-GPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVD 433
++F TI++S GP+ A+IHY ++NR++ D++ L DSGAQY++GTTD+TRT+ G+
Sbjct: 366 LSFETISSSVGPNGAVIHYSPPAETNRIVSPDKIYLCDSGAQYLDGTTDVTRTVHFGEPT 425
Query: 434 YEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWKYGADFAHGVGHGVGSFLPV 493
E+K +TLVLKG I+++ A FP+ T+G LD++AR LWK G D+ HG GHGVGSFL V
Sbjct: 426 AEEKEAYTLVLKGHIALARAVFPKGTKGSVLDALARSALWKAGLDYGHGTGHGVGSFLNV 485
Query: 494 HEGPQGISR---TNQEPLLPGMILSNEPGYYRCGAFGIRIENVLCVSEPETINNGECLML 550
HEGP GI ++ PL GM+ S EPGYY+ G FGIRIENV+ V + T +N L
Sbjct: 486 HEGPIGIGYRPYSSNFPLQAGMVFSIEPGYYKDGEFGIRIENVVEVVDAGTKHNFRGF-L 544
Query: 551 GFNTLTLCPIDRKLILVELLTNEEKKWCNDYHRRVYTSLAPLIE---DQEVLSWLFSVTA 607
F LTL P KLI LL+ EE W N+YH +V + + P ++ E WL + T
Sbjct: 545 TFEPLTLVPYQTKLIDKSLLSEEEINWLNEYHAKVRSKIGPELQKEGRMEEYKWLINATQ 604
Query: 608 PI 609
PI
Sbjct: 605 PI 606
>gnl|CDD|29970 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known
as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid,
including proline, that is linked with proline, even
from a dipeptide or tripeptide..
Length = 224
Score = 297 bits (762), Expect = 6e-81
Identities = 119/229 (51%), Positives = 154/229 (67%), Gaps = 8/229 (3%)
Query: 321 GMQTAHIQDGVAMVYFLFWFYSQ--SLETITEIDIIKKLERCREEIGCKMRNPLRDIAFN 378
GM+ AHI+DGVA+V FL W + ETITE+ KLE R + + ++F+
Sbjct: 1 GMRAAHIRDGVALVEFLAWLEQEVPKGETITELSAADKLEEFRRQ-----QKGYVGLSFD 55
Query: 379 TIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVDYEKKY 438
TI+ GP+ AI+HY T +SNR + D L L+DSG QY++GTTDITRT+ +G+ E+K
Sbjct: 56 TISGFGPNGAIVHYSPTEESNRKISPDGLYLIDSGGQYLDGTTDITRTVHLGEPTAEQKR 115
Query: 439 YFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWKYGADFAHGVGHGVGSFLPVHEGPQ 498
+TLVLKG I+++ A+FP+ T G LD++AR LWK G D+ HG GHGVGSFL VHEGPQ
Sbjct: 116 DYTLVLKGHIALARAKFPKGTTGSQLDALARQPLWKAGLDYGHGTGHGVGSFLNVHEGPQ 175
Query: 499 GIS-RTNQEPLLPGMILSNEPGYYRCGAFGIRIENVLCVSEPETINNGE 546
IS N PL GMILSNEPGYY+ G +GIRIEN++ V E ET G
Sbjct: 176 SISPAPNNVPLKAGMILSNEPGYYKEGKYGIRIENLVLVVEAETTEFGG 224
>gnl|CDD|30356 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 207 bits (527), Expect = 9e-54
Identities = 117/414 (28%), Positives = 190/414 (45%), Gaps = 47/414 (11%)
Query: 171 DMAYAGRESQEKIRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILY 230
+ +A E + ++ + +++ + + A+ + PS+ ++ GFD L ++
Sbjct: 2 ALRFADEEYRARLARLRELMEEAGLDALLLTSPSNFYYLT---GFDAFGF-ERLQALLVP 57
Query: 231 ADGKAEIFFDKQYIN---EQLKALLSAVAIVLD-------MDMMDSRLVCLARTSMPILI 280
A+G+ +F + E L V + D +D++ + L L I I
Sbjct: 58 AEGEPVLFVRGRDEEAAKETSWIKLENVEVYEDDEDPAAPLDLLGALLEELGLAGKRIGI 117
Query: 281 DPK--WISYRFFKVI--AQKNGVMVEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYF 336
+ +++ F+ + A +V+ SD LR K+ EI ++ A A+
Sbjct: 118 ESASIFLTLAAFERLQAALPRAELVDASDLVDRLRLIKSPAEIAKIRKAAEIADAALEAA 177
Query: 337 LFWFYSQSLETITEIDIIKKLERCREEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATV 396
L +TE +I +LE + G +F+TI ASG +AA+ HY
Sbjct: 178 LEAIR----PGMTEAEIAAELEYALRKGGA------EGPSFDTIVASGENAALPHYTP-- 225
Query: 397 QSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFP 456
S+R L+ +L+L+D G Y +DITRT IG E++ + VL+ + A P
Sbjct: 226 -SDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLEAQEAAIAAIRP 284
Query: 457 QRTRGCDLDSIARIFLWK--YGADFAHGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMIL 514
T G ++D+ AR L K YG F HG GHGVG L VHE PQ +S + L PGM+
Sbjct: 285 GVT-GGEVDAAARQVLEKAGYGLYFLHGTGHGVGFVLDVHEHPQYLSPGSDTTLEPGMVF 343
Query: 515 SNEPGYYRCGAFGIRIENVLCVSEPETINNGECLMLGFNTLTLCPIDRKLILVE 568
S EPG Y G G+RIE+ + V+E GF LT P ++L+++E
Sbjct: 344 SIEPGIYIPGGGGVRIEDTVLVTED-----------GFEVLTRVP--KELLVIE 384
Score = 29.3 bits (65), Expect = 3.2
Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 23/146 (15%)
Query: 30 MDAFLVPRVDEYRGE-----FVDKGSERLAWLSGFT-----GSAGIAIVLRQKSVIFVDG 79
+ R+ E E + +L+GF + + + V+FV G
Sbjct: 9 EYRARLARLRELMEEAGLDALLLTSPSNFYYLTGFDAFGFERLQALLVPAEGEPVLFVRG 68
Query: 80 RYTLQVEKEVDTALFTI--------KNIAIEPLHAWISEHGFVGLRLGLDSRLH--SSFE 129
R ++ L + ++ L A + E G G R+G++S +
Sbjct: 69 RDEEAAKETSWIKLENVEVYEDDEDPAAPLDLLGALLEELGLAGKRIGIESASIFLTLAA 128
Query: 130 VDLLQKSLDKIEGVIVDVPYNPIDSL 155
+ LQ +L + E +VD + +D L
Sbjct: 129 FERLQAALPRAE--LVDAS-DLVDRL 151
>gnl|CDD|144226 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 207
Score = 161 bits (409), Expect = 6e-40
Identities = 79/222 (35%), Positives = 113/222 (50%), Gaps = 18/222 (8%)
Query: 320 EGMQTAHIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCKMRNPLRDIAFNT 379
E M+ A A+ L +TE ++ +LE R R AF
Sbjct: 1 ELMRKAARIAAAALEAALAAIR----PGVTERELAAELEEA-----FLARGGARGPAFPP 51
Query: 380 IAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVDYEKKYY 439
I ASGP+AA+ HY S+R+L+ +L+L+D GA+Y +DITRT +G E++
Sbjct: 52 IVASGPNAAVPHYIP---SDRVLKDGDLVLIDVGAEYDGYHSDITRTFVVGKPTPEQREL 108
Query: 440 FTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWKYG-ADFAHGVGHGVGSFLPVH-EGP 497
+ VL+ + A P G D+D+ AR L + G F HG+GHG+G L VH EGP
Sbjct: 109 YEAVLEAQEAAIAAVKP-GVTGGDVDAAAREVLEEGGYGVFPHGLGHGIG--LDVHDEGP 165
Query: 498 QGISRTNQEPLLPGMILSNEPGYYRC-GAFGIRIENVLCVSE 538
IS + L PGM+ + EPG Y G G+RIE+ + V+E
Sbjct: 166 YIISGGSDRVLEPGMVFTIEPGIYFIPGWGGVRIEDTVLVTE 207
>gnl|CDD|29977 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline..
Length = 208
Score = 137 bits (347), Expect = 7e-33
Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 15/202 (7%)
Query: 339 WFYSQSLETITEIDIIKKLERCREEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQS 398
+TE ++ +LE ++G +F+TI ASGP++A+ H S
Sbjct: 17 ELLEFIKPGMTEREVAAELEYFMRKLGA------EGPSFDTIVASGPNSALPHGVP---S 67
Query: 399 NRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQR 458
+R +++ +L+L+D GA Y +DITRT+A+G+ E K + +VL+ + A P
Sbjct: 68 DRKIEEGDLVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLEAQQAAIKAVKPG- 126
Query: 459 TRGCDLDSIARIFLWK--YGADFAHGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSN 516
++D AR + + YG F H GHGVG L VHE P IS + + L GM+ +
Sbjct: 127 VTAKEVDKAARDVIEEAGYGEYFIHRTGHGVG--LEVHEAPY-ISPGSDDVLEEGMVFTI 183
Query: 517 EPGYYRCGAFGIRIENVLCVSE 538
EPG Y G G+RIE+ + V+E
Sbjct: 184 EPGIYIPGKGGVRIEDDVLVTE 205
>gnl|CDD|29969 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation..
Length = 207
Score = 94.8 bits (235), Expect = 7e-20
Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 20/222 (9%)
Query: 319 IEGMQTAHIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCKMRNPLRDIAFN 378
I ++ A AM +TE ++ I +R A
Sbjct: 1 IARLRKAAEIAEAAMAAAAEAIR----PGVTEAEV-------AAAIEQALRAAGGYPAGP 49
Query: 379 TIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVDYEKKY 438
TI SG A+ HY+ +R LQ+ +L+L+D G Y D+TRT IG+ E++
Sbjct: 50 TIVGSGARTALPHYRPD---DRRLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRE 106
Query: 439 YFTLVLKGMISVSTARFPQRTRGCDLDSIARIFL--WKYGADFAHGVGHGVGSFLPVHEG 496
+ V + + A P ++D+ AR L G +F H GHG+G L +HE
Sbjct: 107 LYEAVREAQEAALAALRP-GVTAEEVDAAAREVLEEHGLGPNFGHRTGHGIG--LEIHEP 163
Query: 497 PQGISRTNQEPLLPGMILSNEPGYYRCGAFGIRIENVLCVSE 538
P + + L PGM+ + EPG Y G G+RIE+ + V+E
Sbjct: 164 P-VLKAGDDTVLEPGMVFAVEPGLYLPGGGGVRIEDTVLVTE 204
>gnl|CDD|29972 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro..
Length = 243
Score = 79.8 bits (197), Expect = 2e-15
Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 38/202 (18%)
Query: 374 DIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAI-GDV 432
+A++ I A+G +AAI+HY V +++ L+ +L+L+D+GA+Y +DITRT + G
Sbjct: 45 RLAYSYIVAAGSNAAILHY---VHNDQPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKF 101
Query: 433 DYEKKYYFTLVLKG----------------MISVSTARFPQRTRGCDL---DSIARIFLW 473
E++ + VL + ++ + + + D +
Sbjct: 102 TDEQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESG 161
Query: 474 KYGADFAHGVGHGVGSFLPVH--EGPQGISRTNQEPLLPGMILSNEPGYYRCGAF----- 526
Y F HG+GH +G L VH G R + PL PGM+++ EPG Y
Sbjct: 162 AYAKFFPHGLGHYLG--LDVHDVGGYLRYLRRAR-PLEPGMVITIEPGIYFIPDLLDVPE 218
Query: 527 -----GIRIENVLCVSEPETIN 543
GIRIE+ + V+E N
Sbjct: 219 YFRGGGIRIEDDVLVTEDGPEN 240
>gnl|CDD|144790 pfam01321, Creatinase_N, Creatinase/Prolidase N-terminal domain.
This family includes the N-terminal non-catalytic
domains from creatinase and prolidase. The exact
function of this domain is uncertain.
Length = 127
Score = 68.1 bits (167), Expect = 6e-12
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
Query: 17 RVHNLRSCFDSLGMDAFLVPRVDEYRGEFVDKGSERLAWLSGFTGSAGIAIVL-RQKSVI 75
R+ LR G+DA L+ E + +L+GFTGS G+A+V+ + +
Sbjct: 1 RLERLRELMAEAGLDALLLTS------------PENIRYLTGFTGSRGLALVVTADGATL 48
Query: 76 FVD-GRYTLQVEKEVDTALFTIKNIAIEPLHAWISEHGFVGLRLGLDSRLHSSFEVDLLQ 134
D RYT E+ +D + + E L + E G RLG + + E + L+
Sbjct: 49 LTDALRYTEAAEESLDEEIIEYDD--AEALADLLKELGLELKRLGFEGDHLTVAEYERLK 106
Query: 135 KSLDKIEGVIVDV 147
++L E +VD
Sbjct: 107 EALPDAE--LVDA 117
>gnl|CDD|37948 KOG2737, KOG2737, KOG2737, Putative metallopeptidase [General
function prediction only].
Length = 492
Score = 67.7 bits (165), Expect = 9e-12
Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 37/190 (19%)
Query: 366 CKMRNPLRDIAFNTIAASGPHAAIIHY-QATVQSNRLLQKDELLLLDSGAQYVNGTTDIT 424
R +++ I ASG ++A++HY A ++R +Q +L L D GA+Y +DIT
Sbjct: 229 SYSYGGCRHLSYTCICASGDNSAVLHYGHAGAPNDRTIQDGDLCLFDMGAEYHFYASDIT 288
Query: 425 RTI-AIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIA--------------- 468
+ G ++K + VL +V A P D+ +A
Sbjct: 289 CSFPVNGKFTADQKLVYNAVLDASNAVMEAMKPG-VWWVDMHKLAEKVLLEHLAQMGILK 347
Query: 469 ----RIFLWKYGADF-AHGVGHGVGSFLPVHE---GPQGISRTNQ---------EPLLPG 511
+ + GA F HG+GH +G L VH+ P+G+ R ++ L G
Sbjct: 348 GDVDEMVEARLGAVFMPHGLGHFLG--LDVHDVGGYPEGVERPDEPGLRSLRTARHLKEG 405
Query: 512 MILSNEPGYY 521
M+++ EPG Y
Sbjct: 406 MVITVEPGCY 415
>gnl|CDD|37625 KOG2414, KOG2414, KOG2414, Putative Xaa-Pro aminopeptidase [Amino
acid transport and metabolism].
Length = 488
Score = 61.9 bits (150), Expect = 5e-10
Identities = 57/204 (27%), Positives = 90/204 (44%), Gaps = 37/204 (18%)
Query: 363 EIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTD 422
E C+ R R A+ + A G +A IHY V++N+LL+ DE++L+D+G + +D
Sbjct: 269 EYECRRRGADRL-AYPPVVAGGKNANTIHY---VRNNQLLKDDEMVLVDAGCELGGYVSD 324
Query: 423 ITRTIAIGDV--DYEKKYYFTLV-----------------LKGMISVSTARFPQRTRGCD 463
ITRT I D ++ Y ++ L + S Q +
Sbjct: 325 ITRTWPISGKFSDAQRDLYEAVLQVQEECIKYCKPSNGTSLSQLFERSNELLGQELKELG 384
Query: 464 LDSIARIFLWKYGADFAHGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPGYY-- 521
+ R + + H VGH +G + VH+ P +SR PL PGM+++ EPG Y
Sbjct: 385 IRKTDREEMIQAEKLCPHHVGHYLG--MDVHDCPT-VSRD--IPLQPGMVITIEPGVYIP 439
Query: 522 -------RCGAFGIRIENVLCVSE 538
GIRIE+ + + E
Sbjct: 440 EDDDPPEEFRGIGIRIEDDVAIGE 463
>gnl|CDD|30374 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 45.2 bits (107), Expect = 5e-05
Identities = 36/179 (20%), Positives = 61/179 (34%), Gaps = 17/179 (9%)
Query: 347 TITEIDIIKKLERCREEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDE 406
T E+D I + E RE+ + F S + + H ++L++ +
Sbjct: 37 TTLELDEIAE-EFIREKGAYPAFLGYKGFPF-PTCIS-VNEVVAHG--IPGDKKVLKEGD 91
Query: 407 LLLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKG--MISVSTARFPQRTR--GC 462
++ +D GA D T +G+V E K + + R G
Sbjct: 92 IVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARLGDIGR 151
Query: 463 DLDSIARIFLWKYGADFAHGVGHGVGSFLPVHEGPQ--GISRTNQEPLL-PGMILSNEP 518
+ A + + GHG+G L HE P + L GM+ + EP
Sbjct: 152 AIQEYAESRGFSVVRNL---TGHGIGREL--HEEPSIPNYGKDGTGVRLKEGMVFAIEP 205
>gnl|CDD|29973 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and
arylamides..
Length = 291
Score = 30.9 bits (70), Expect = 0.94
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 348 ITEIDIIKKLERCREEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDEL 407
+T ++I + +E E+G P+ +++ N AA HY + +L++ ++
Sbjct: 26 MTLLEIAEFVENRIRELGAGPAFPV-NLSINECAA--------HYTPNAGDDTVLKEGDV 76
Query: 408 LLLDSGAQYVNG 419
+ LD GA V+G
Sbjct: 77 VKLDFGAH-VDG 87
>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine
Kinase, Thousand-and-one amino acids proteins.
Serine/threonine kinases (STKs), thousand-and-one amino
acids (TAO) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. They activate the MAPKs, p38 and c-Jun
N-terminal kinase (JNK), by phosphorylating and
activating the respective MAP/ERK kinases (MEKs, also
known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK
signaling cascades are important in mediating cellular
responses to extracellular signals. Vertebrates contain
three TAO subfamily members, named TAO1, TAO2, and TAO3.
Length = 307
Score = 30.9 bits (70), Expect = 0.97
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 167 VAMQDMAYAGRESQEKIRDICK 188
VA++ M+Y+G++S EK +DI K
Sbjct: 43 VAIKKMSYSGKQSNEKWQDIIK 64
>gnl|CDD|35797 KOG0577, KOG0577, KOG0577, Serine/threonine protein kinase [Signal
transduction mechanisms].
Length = 948
Score = 30.4 bits (68), Expect = 1.5
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 167 VAMQDMAYAGRESQEKIRDICK 188
VA++ M+Y+G++S EK +DI K
Sbjct: 54 VAIKKMSYSGKQSNEKWQDILK 75
>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 1.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 1 (TAO1) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO1 is sometimes referred to as prostate-derived
sterile 20-like kinase 2 (PSK2). TAO1 activates the p38
MAPK through direct interaction with and activation of
MEK3. TAO1 is highly expressed in the brain and may play
a role in neuronal apoptosis. TAO1 interacts with the
checkpoint proteins BubR1 and Mad2, and plays an
important role in regulating mitotic progression, which
is required for both chromosome congression and
checkpoint-induced anaphase delay. TAO1 may play a role
in protecting genomic stability.
Length = 317
Score = 28.9 bits (64), Expect = 4.2
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 159 RPQRLYRKVAMQDMAYAGRESQEKIRDICK 188
R R VA++ M+Y+G++S EK +DI K
Sbjct: 45 RDVRTNEVVAIKKMSYSGKQSNEKWQDIIK 74
>gnl|CDD|144590 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent
enzyme. This family includes enzymes involved in
cysteine and methionine metabolism. The following are
members: Cystathionine gamma-lyase, Cystathionine
gamma-synthase, Cystathionine beta-lyase, Methionine
gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine
sulfhydrylase All of these members participate is
slightly different reactions. All these enzymes use PLP
(pyridoxal-5'-phosphate) as a cofactor.
Length = 381
Score = 28.7 bits (65), Expect = 4.5
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 31/85 (36%)
Query: 286 SYRFFKVIAQKNGV---MVEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYS 342
+YR F+ + + G+ V+ SD L A I+ V+
Sbjct: 104 TYRLFEKVLPRFGIEVTFVDPSDLDAL--------------EAAIKPNTKAVFL------ 143
Query: 343 QSLETIT-----EIDIIKKLERCRE 362
ET T +DI + ++
Sbjct: 144 ---ETPTNPLLKVVDIEAIAKIAKK 165
>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 2.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 2 (TAO2) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Human TAO2 is also known as prostate-derived Ste20-like
kinase (PSK) and was identified in a screen for
overexpressed RNAs in prostate cancer. TAO2 activates
both p38 and c-Jun N-terminal kinase (JNK), by
phosphorylating and activating the respective MAP/ERK
kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6
and MKK4/MKK7. TAO2 contains a long C-terminal extension
with autoinhibitory segments. It is activated by the
release of this inhibition and the phosphorylation of
its activation loop serine. TAO2 functions as a
regulator of actin cytoskeletal and microtubule
organization. In addition, it regulates the transforming
growth factor-activated kinase 1 (TAK1), which is a
MAPKKK that plays an essential role in the signaling
pathways of tumor necrosis factor (TNF), interleukin 1
(IL-1), and Toll-like receptor (TLR).
Length = 308
Score = 28.5 bits (63), Expect = 6.3
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 167 VAMQDMAYAGRESQEKIRDICK 188
VA++ M+Y+G++S EK +DI K
Sbjct: 43 VAIKKMSYSGKQSNEKWQDIIK 64
>gnl|CDD|32270 COG2087, CobU, Adenosyl cobinamide kinase/adenosyl cobinamide
phosphate guanylyltransferase [Coenzyme metabolism].
Length = 175
Score = 28.3 bits (63), Expect = 6.6
Identities = 19/101 (18%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 81 YTLQVEKEVDTALFTIKN----IAIEPLHAWISEHGFVGLRLGLDSRLHSSFEVDLLQKS 136
T++ ++ T L + + ++ L W++ F G + + E++ L +
Sbjct: 57 RTVEAPLDLATLLEALIEPGDVVLVDCLTLWVTNLLFAGEKDWSAEAAIEA-EIEALLAA 115
Query: 137 LDKIEGVIV---------DVPYNPIDSLWKDRPQRLYRKVA 168
L + G +V VP + L++D RL +++A
Sbjct: 116 LSRAPGTVVLVSNEVGLGIVPEYRLGRLFRDIAGRLNQQLA 156
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.323 0.139 0.422
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 7,605,885
Number of extensions: 415868
Number of successful extensions: 822
Number of sequences better than 10.0: 1
Number of HSP's gapped: 789
Number of HSP's successfully gapped: 27
Length of query: 609
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 510
Effective length of database: 4,124,446
Effective search space: 2103467460
Effective search space used: 2103467460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.9 bits)