RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780605|ref|YP_003065018.1| putative aminopeptidase [Candidatus Liberibacter asiaticus str. psy62] (609 letters) >gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional. Length = 361 Score = 85.0 bits (210), Expect = 5e-17 Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 14/170 (8%) Query: 376 AFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVDYE 435 +F+TI ASG A+ H +A S++++ E + LD GA Y +D+TRT+ + Sbjct: 180 SFDTIVASGWRGALPHGKA---SDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVS 236 Query: 436 KKYY-----FTLVLKGMISVSTARFPQRTRGCDLDSIAR--IFLWKYGADFAHGVGHGVG 488 + + + +VL+ ++ +A P R +D AR I YG F H GH +G Sbjct: 237 AESHPLFNVYQIVLQAQLAAISAIRPG-VRCQQVDDAARRVITEAGYGDYFGHNTGHAIG 295 Query: 489 SFLPVHEGPQGISRTNQEPLLPGMILSNEPGYYRCGAFGIRIENVLCVSE 538 + VHE P+ S + L PGM+L+ EPG Y G G+RIE+V+ V+ Sbjct: 296 --IEVHEDPR-FSPRDTTTLQPGMLLTVEPGIYLPGQGGVRIEDVVLVTP 342 >gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional. Length = 438 Score = 61.7 bits (150), Expect = 5e-10 Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 39/194 (20%) Query: 376 AFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAI-GDVDY 434 ++NTI SG + I+HY ++ ++ +L+L+D+G +Y DITRT + G Sbjct: 226 SYNTIVGSGENGCILHY---TENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTP 282 Query: 435 EKKYYFTLVLKGMISVSTARF-PQRTRGCDLDSIARIF---LWKYG----------AD-- 478 ++ + +VL+ + S + P + + RI L K G A+ Sbjct: 283 AQREIYDIVLE-SLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENA 341 Query: 479 ----FAHGVGHGVGSFLPVHE-GPQGISRTNQEPLLPGMILSNEPGYY---------RCG 524 F HG+ H +G L VH+ G G R+ L PGM+L+ EPG Y + Sbjct: 342 HRPFFMHGLSHWLG--LDVHDVGVYGQDRS--RILEPGMVLTVEPGLYIAPDADVPEQYR 397 Query: 525 AFGIRIENVLCVSE 538 GIRIE+ + ++E Sbjct: 398 GIGIRIEDDIVITE 411 >gnl|CDD|184178 PRK13607, PRK13607, proline dipeptidase; Provisional. Length = 443 Score = 44.1 bits (105), Expect = 1e-04 Identities = 61/234 (26%), Positives = 86/234 (36%), Gaps = 88/234 (37%) Query: 374 DIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIA----- 428 D+ + I A HAA++HY T ++ + L+D+GA+Y DITRT A Sbjct: 211 DVPYGNIVALNEHAAVLHY--TKLDHQAPAEMRSFLIDAGAEYNGYAADITRTYAAKEDN 268 Query: 429 -----IGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDL-----DSIARIFLWKYG-- 476 I DV+ E+ L L + + DL IA++ L K+ Sbjct: 269 DFAALIKDVNKEQ-----LALIATMKPGV-SYV------DLHIQMHQRIAKL-LRKFQIV 315 Query: 477 ---------------ADFAHGVGH--G-----VGSFLPVHEGPQGISRTNQEPLL----- 509 F HG+GH G V F+ G ++ + P L Sbjct: 316 TGLSEEAMVEQGITSPFFPHGLGHPLGLQVHDVAGFMQDDRGTH-LAAPEKHPYLRCTRV 374 Query: 510 --PGMILSNEPGYY---------RCGAF----------------GIRIE-NVLC 535 PGM+L+ EPG Y R G F GIRIE NV+ Sbjct: 375 LEPGMVLTIEPGLYFIDSLLAPLREGPFSKHFNWQKIDALKPFGGIRIEDNVVV 428 >gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional. Length = 405 Score = 42.7 bits (100), Expect = 3e-04 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 2/134 (1%) Query: 406 ELLLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLD 465 +L+ D G D+ RT +G+ D + + + G + + P D Sbjct: 256 DLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFD 315 Query: 466 SIARIFLWKYGADFAHG-VGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPGYYRCG 524 S + + G +GHG G FL + E P +S E PGM+LS E YY G Sbjct: 316 STMAVIKTSGLPHYNRGHLGHGDGVFLGLEEVP-FVSTQATETFCPGMVLSLETPYYGIG 374 Query: 525 AFGIRIENVLCVSE 538 I +E+++ +++ Sbjct: 375 VGSIMLEDMILITD 388 >gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional. Length = 291 Score = 37.5 bits (87), Expect = 0.009 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 12/103 (11%) Query: 422 DITRTIAIGDVDYEKKYYFTLVLKGM---ISVSTARFPQRTRGCDLDSIARIFLWKYGAD 478 D +R + IG+V KK L+ + I++ P G +++ A KYG Sbjct: 146 DCSRMVMIGEVSEIKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCAD----KYGFS 201 Query: 479 FAHG-VGHGVGSFLPVHEGPQGISRTNQE--PLLPGMILSNEP 518 VGHGVG + HE P N PL PGMI + EP Sbjct: 202 VVDQFVGHGVG--IKFHENPYVPHHRNSSKIPLAPGMIFTIEP 242 >gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional. Length = 323 Score = 37.0 bits (85), Expect = 0.013 Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 2/144 (1%) Query: 396 VQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARF 455 + SN +L+ D G DI RT +G+ + + + G + + Sbjct: 164 IPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVA 223 Query: 456 PQRTRGCDLDSIARIFLWKYGADFAHG-VGHGVGSFLPVHEGPQGISRTNQEPLLPGMIL 514 P DS + ++ G +GHG G FL + E P +S E GM+L Sbjct: 224 PGVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGVFLGLEESP-FVSTHATESFTSGMVL 282 Query: 515 SNEPGYYRCGAFGIRIENVLCVSE 538 S E YY I IE+++ +++ Sbjct: 283 SLETPYYGYNLGSIMIEDMILINK 306 >gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional. Length = 406 Score = 37.0 bits (85), Expect = 0.013 Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 2/144 (1%) Query: 396 VQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARF 455 + SN +L+ D G DI RT +G+ + + + G + + Sbjct: 247 IPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVA 306 Query: 456 PQRTRGCDLDSIARIFLWKYGADFAHG-VGHGVGSFLPVHEGPQGISRTNQEPLLPGMIL 514 P DS + ++ G +GHG G FL + E P +S E GM+L Sbjct: 307 PGVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGVFLGLEESP-FVSTHATESFTSGMVL 365 Query: 515 SNEPGYYRCGAFGIRIENVLCVSE 538 S E YY I IE+++ +++ Sbjct: 366 SLETPYYGYNLGSIMIEDMILINK 389 >gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. Length = 1169 Score = 34.2 bits (79), Expect = 0.086 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 19/82 (23%) Query: 30 MDAFLVPRVDEYRGEFVDKGSERLAWLSGFTGSAGIA-IVLRQ-------KSVIFVDGRY 81 +D+F + FVD + W G GS GI+ VL Q + F G Sbjct: 985 LDSF----FQQNLAPFVDTSANPWRWKGGDGGSLGISPSVLAQFQRAARIRDAFFRSGGG 1040 Query: 82 TLQVEKEVDTALFTIKNIAIEP 103 V FT+K I+++P Sbjct: 1041 EPAVS-------FTLKPISLDP 1055 >gnl|CDD|161917 TIGR00535, SAM_DCase, S-adenosylmethionine decarboxylase proenzyme, eukaryotic form. This protein is a pyruvoyl-dependent enzyme. The proenzyme is cleaved at a Ser residue that becomes a pyruvoyl group active site. Length = 334 Score = 32.1 bits (73), Expect = 0.40 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 11/91 (12%) Query: 116 LRLGLDSRLHSSF--EVDLLQKSLDKIEGVIVDVPYNPIDSLWKDRPQRLYRKVAMQDMA 173 L +H +F EV L K + +V P +PQ+ + VA + Sbjct: 111 LFPCAQPAIHRNFSEEVAYLNKFFGNGKAYVVGDP---------AKPQKWHLYVAETERE 161 Query: 174 YAGRESQEKIRDICKILHQKEVGAVFICDPS 204 E ++ ++ KE + F P+ Sbjct: 162 TPKIEDPDETLEMLMTGLDKEKASKFFKGPA 192 >gnl|CDD|163232 TIGR03359, VI_chp_6, type VI secretion protein, VC_A0110 family. This protein family is associated with type VI secretion in a number of pathogenic bacteria. Mutation is associated with impaired virulence, such as impaired infection of plants by Rhizobium leguminosarum. Length = 598 Score = 29.5 bits (67), Expect = 2.3 Identities = 9/30 (30%), Positives = 13/30 (43%) Query: 96 IKNIAIEPLHAWISEHGFVGLRLGLDSRLH 125 I I +P+ + GF G GL+ L Sbjct: 512 IVGIETKPVTRRVPGKGFAGFVRGLEITLT 541 >gnl|CDD|182718 PRK10773, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed. Length = 453 Score = 28.8 bits (65), Expect = 3.7 Identities = 31/91 (34%), Positives = 39/91 (42%), Gaps = 22/91 (24%) Query: 164 YRKVAMQDMAYAGRESQEKIRDICKILHQKEVG-AVFICDPSSIAWIFNIRGFDIPCSPY 222 YR + + DMA G ES+ C H+ +VG A G D S Sbjct: 354 YRVMVVGDMAELGAESEA-----C---HR-QVGEAAKAA------------GIDKVLSVG 392 Query: 223 PLSRAILYADGKAEIFFDKQYINEQLKALLS 253 LS AI A G E F DK + +LKALL+ Sbjct: 393 KLSHAISEASGVGEHFADKTALIARLKALLA 423 >gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional. Length = 449 Score = 28.5 bits (64), Expect = 5.2 Identities = 11/21 (52%), Positives = 11/21 (52%) Query: 502 RTNQEPLLPGMILSNEPGYYR 522 R N EPLLPG P YR Sbjct: 163 RRNYEPLLPGCFHVETPWLYR 183 >gnl|CDD|150177 pfam09416, UPF1_Zn_bind, RNA helicase (UPF2 interacting domain). UPF1 is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD). Length = 152 Score = 28.2 bits (63), Expect = 7.2 Identities = 9/15 (60%), Positives = 12/15 (80%) Query: 591 PLIEDQEVLSWLFSV 605 PLIE+++ LSWL V Sbjct: 111 PLIEERQFLSWLVPV 125 >gnl|CDD|151399 pfam10952, DUF2753, Protein of unknown function (DUF2753). This bacterial family of proteins has no known function. Length = 140 Score = 28.2 bits (63), Expect = 7.4 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 9/71 (12%) Query: 372 LRDIAFNTIAASGPHAAIIHYQ-ATVQSNRLLQKDELLLLDSGAQYV---NGTTDITRTI 427 L D A P +I+HYQ A +S L + +E L D V + D R Sbjct: 7 LADEALK---NGDPLRSILHYQQALAESQELDESNEDELEDLLTIKVISCHNLADFWR-- 61 Query: 428 AIGDVDYEKKY 438 A GD +YE KY Sbjct: 62 AQGDPEYELKY 72 >gnl|CDD|163338 TIGR03588, PseC, UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. Length = 380 Score = 27.7 bits (62), Expect = 8.9 Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 35/116 (30%) Query: 462 CDLDSIARIFLWKYGA----DFAHGVG-----HGVG----------SFLPVH-----EGP 497 D+ +IA + K+G D +H +G VG SF PV EG Sbjct: 135 VDMQAIAAL-AKKHGLKIIEDASHALGAEYGGKPVGNCRYADATVFSFHPVKIITTAEG- 192 Query: 498 QGISRTNQEPLLPGMILSNEPGYYRCGAFGIRIENVLCVSEPETINNGECLMLGFN 553 G TN E L M L R + GI + +L + E E LGFN Sbjct: 193 -GAVTTNDEELAERMRL------LR--SHGITKDPLLFEKQDEGPWYYEQQELGFN 239 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.323 0.139 0.422 Gapped Lambda K H 0.267 0.0721 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 10,189,353 Number of extensions: 675604 Number of successful extensions: 1165 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1153 Number of HSP's successfully gapped: 21 Length of query: 609 Length of database: 5,994,473 Length adjustment: 99 Effective length of query: 510 Effective length of database: 3,855,281 Effective search space: 1966193310 Effective search space used: 1966193310 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 60 (26.9 bits)