RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780605|ref|YP_003065018.1| putative aminopeptidase
[Candidatus Liberibacter asiaticus str. psy62]
(609 letters)
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 85.0 bits (210), Expect = 5e-17
Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 14/170 (8%)
Query: 376 AFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVDYE 435
+F+TI ASG A+ H +A S++++ E + LD GA Y +D+TRT+ +
Sbjct: 180 SFDTIVASGWRGALPHGKA---SDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVS 236
Query: 436 KKYY-----FTLVLKGMISVSTARFPQRTRGCDLDSIAR--IFLWKYGADFAHGVGHGVG 488
+ + + +VL+ ++ +A P R +D AR I YG F H GH +G
Sbjct: 237 AESHPLFNVYQIVLQAQLAAISAIRPG-VRCQQVDDAARRVITEAGYGDYFGHNTGHAIG 295
Query: 489 SFLPVHEGPQGISRTNQEPLLPGMILSNEPGYYRCGAFGIRIENVLCVSE 538
+ VHE P+ S + L PGM+L+ EPG Y G G+RIE+V+ V+
Sbjct: 296 --IEVHEDPR-FSPRDTTTLQPGMLLTVEPGIYLPGQGGVRIEDVVLVTP 342
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 61.7 bits (150), Expect = 5e-10
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 39/194 (20%)
Query: 376 AFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAI-GDVDY 434
++NTI SG + I+HY ++ ++ +L+L+D+G +Y DITRT + G
Sbjct: 226 SYNTIVGSGENGCILHY---TENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTP 282
Query: 435 EKKYYFTLVLKGMISVSTARF-PQRTRGCDLDSIARIF---LWKYG----------AD-- 478
++ + +VL+ + S + P + + RI L K G A+
Sbjct: 283 AQREIYDIVLE-SLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENA 341
Query: 479 ----FAHGVGHGVGSFLPVHE-GPQGISRTNQEPLLPGMILSNEPGYY---------RCG 524
F HG+ H +G L VH+ G G R+ L PGM+L+ EPG Y +
Sbjct: 342 HRPFFMHGLSHWLG--LDVHDVGVYGQDRS--RILEPGMVLTVEPGLYIAPDADVPEQYR 397
Query: 525 AFGIRIENVLCVSE 538
GIRIE+ + ++E
Sbjct: 398 GIGIRIEDDIVITE 411
>gnl|CDD|184178 PRK13607, PRK13607, proline dipeptidase; Provisional.
Length = 443
Score = 44.1 bits (105), Expect = 1e-04
Identities = 61/234 (26%), Positives = 86/234 (36%), Gaps = 88/234 (37%)
Query: 374 DIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIA----- 428
D+ + I A HAA++HY T ++ + L+D+GA+Y DITRT A
Sbjct: 211 DVPYGNIVALNEHAAVLHY--TKLDHQAPAEMRSFLIDAGAEYNGYAADITRTYAAKEDN 268
Query: 429 -----IGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDL-----DSIARIFLWKYG-- 476
I DV+ E+ L L + + DL IA++ L K+
Sbjct: 269 DFAALIKDVNKEQ-----LALIATMKPGV-SYV------DLHIQMHQRIAKL-LRKFQIV 315
Query: 477 ---------------ADFAHGVGH--G-----VGSFLPVHEGPQGISRTNQEPLL----- 509
F HG+GH G V F+ G ++ + P L
Sbjct: 316 TGLSEEAMVEQGITSPFFPHGLGHPLGLQVHDVAGFMQDDRGTH-LAAPEKHPYLRCTRV 374
Query: 510 --PGMILSNEPGYY---------RCGAF----------------GIRIE-NVLC 535
PGM+L+ EPG Y R G F GIRIE NV+
Sbjct: 375 LEPGMVLTIEPGLYFIDSLLAPLREGPFSKHFNWQKIDALKPFGGIRIEDNVVV 428
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 42.7 bits (100), Expect = 3e-04
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 2/134 (1%)
Query: 406 ELLLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLD 465
+L+ D G D+ RT +G+ D + + + G + + P D
Sbjct: 256 DLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFD 315
Query: 466 SIARIFLWKYGADFAHG-VGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPGYYRCG 524
S + + G +GHG G FL + E P +S E PGM+LS E YY G
Sbjct: 316 STMAVIKTSGLPHYNRGHLGHGDGVFLGLEEVP-FVSTQATETFCPGMVLSLETPYYGIG 374
Query: 525 AFGIRIENVLCVSE 538
I +E+++ +++
Sbjct: 375 VGSIMLEDMILITD 388
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 37.5 bits (87), Expect = 0.009
Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 422 DITRTIAIGDVDYEKKYYFTLVLKGM---ISVSTARFPQRTRGCDLDSIARIFLWKYGAD 478
D +R + IG+V KK L+ + I++ P G +++ A KYG
Sbjct: 146 DCSRMVMIGEVSEIKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCAD----KYGFS 201
Query: 479 FAHG-VGHGVGSFLPVHEGPQGISRTNQE--PLLPGMILSNEP 518
VGHGVG + HE P N PL PGMI + EP
Sbjct: 202 VVDQFVGHGVG--IKFHENPYVPHHRNSSKIPLAPGMIFTIEP 242
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 37.0 bits (85), Expect = 0.013
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 2/144 (1%)
Query: 396 VQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARF 455
+ SN +L+ D G DI RT +G+ + + + G + +
Sbjct: 164 IPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVA 223
Query: 456 PQRTRGCDLDSIARIFLWKYGADFAHG-VGHGVGSFLPVHEGPQGISRTNQEPLLPGMIL 514
P DS + ++ G +GHG G FL + E P +S E GM+L
Sbjct: 224 PGVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGVFLGLEESP-FVSTHATESFTSGMVL 282
Query: 515 SNEPGYYRCGAFGIRIENVLCVSE 538
S E YY I IE+++ +++
Sbjct: 283 SLETPYYGYNLGSIMIEDMILINK 306
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 37.0 bits (85), Expect = 0.013
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 2/144 (1%)
Query: 396 VQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARF 455
+ SN +L+ D G DI RT +G+ + + + G + +
Sbjct: 247 IPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVA 306
Query: 456 PQRTRGCDLDSIARIFLWKYGADFAHG-VGHGVGSFLPVHEGPQGISRTNQEPLLPGMIL 514
P DS + ++ G +GHG G FL + E P +S E GM+L
Sbjct: 307 PGVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGVFLGLEESP-FVSTHATESFTSGMVL 365
Query: 515 SNEPGYYRCGAFGIRIENVLCVSE 538
S E YY I IE+++ +++
Sbjct: 366 SLETPYYGYNLGSIMIEDMILINK 389
>gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of this
protein family are IcmF homologs and tend to be
associated with type VI secretion systems.
Length = 1169
Score = 34.2 bits (79), Expect = 0.086
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 19/82 (23%)
Query: 30 MDAFLVPRVDEYRGEFVDKGSERLAWLSGFTGSAGIA-IVLRQ-------KSVIFVDGRY 81
+D+F + FVD + W G GS GI+ VL Q + F G
Sbjct: 985 LDSF----FQQNLAPFVDTSANPWRWKGGDGGSLGISPSVLAQFQRAARIRDAFFRSGGG 1040
Query: 82 TLQVEKEVDTALFTIKNIAIEP 103
V FT+K I+++P
Sbjct: 1041 EPAVS-------FTLKPISLDP 1055
>gnl|CDD|161917 TIGR00535, SAM_DCase, S-adenosylmethionine decarboxylase proenzyme,
eukaryotic form. This protein is a pyruvoyl-dependent
enzyme. The proenzyme is cleaved at a Ser residue that
becomes a pyruvoyl group active site.
Length = 334
Score = 32.1 bits (73), Expect = 0.40
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 11/91 (12%)
Query: 116 LRLGLDSRLHSSF--EVDLLQKSLDKIEGVIVDVPYNPIDSLWKDRPQRLYRKVAMQDMA 173
L +H +F EV L K + +V P +PQ+ + VA +
Sbjct: 111 LFPCAQPAIHRNFSEEVAYLNKFFGNGKAYVVGDP---------AKPQKWHLYVAETERE 161
Query: 174 YAGRESQEKIRDICKILHQKEVGAVFICDPS 204
E ++ ++ KE + F P+
Sbjct: 162 TPKIEDPDETLEMLMTGLDKEKASKFFKGPA 192
>gnl|CDD|163232 TIGR03359, VI_chp_6, type VI secretion protein, VC_A0110 family.
This protein family is associated with type VI secretion
in a number of pathogenic bacteria. Mutation is
associated with impaired virulence, such as impaired
infection of plants by Rhizobium leguminosarum.
Length = 598
Score = 29.5 bits (67), Expect = 2.3
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 96 IKNIAIEPLHAWISEHGFVGLRLGLDSRLH 125
I I +P+ + GF G GL+ L
Sbjct: 512 IVGIETKPVTRRVPGKGFAGFVRGLEITLT 541
>gnl|CDD|182718 PRK10773, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase; Reviewed.
Length = 453
Score = 28.8 bits (65), Expect = 3.7
Identities = 31/91 (34%), Positives = 39/91 (42%), Gaps = 22/91 (24%)
Query: 164 YRKVAMQDMAYAGRESQEKIRDICKILHQKEVG-AVFICDPSSIAWIFNIRGFDIPCSPY 222
YR + + DMA G ES+ C H+ +VG A G D S
Sbjct: 354 YRVMVVGDMAELGAESEA-----C---HR-QVGEAAKAA------------GIDKVLSVG 392
Query: 223 PLSRAILYADGKAEIFFDKQYINEQLKALLS 253
LS AI A G E F DK + +LKALL+
Sbjct: 393 KLSHAISEASGVGEHFADKTALIARLKALLA 423
>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional.
Length = 449
Score = 28.5 bits (64), Expect = 5.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 502 RTNQEPLLPGMILSNEPGYYR 522
R N EPLLPG P YR
Sbjct: 163 RRNYEPLLPGCFHVETPWLYR 183
>gnl|CDD|150177 pfam09416, UPF1_Zn_bind, RNA helicase (UPF2 interacting domain).
UPF1 is an essential RNA helicase that detects mRNAs
containing premature stop codons and triggers their
degradation. This domain contains 3 zinc binding motifs
and forms interactions with another protein (UPF2) that
is also involved nonsense-mediated mRNA decay (NMD).
Length = 152
Score = 28.2 bits (63), Expect = 7.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 591 PLIEDQEVLSWLFSV 605
PLIE+++ LSWL V
Sbjct: 111 PLIEERQFLSWLVPV 125
>gnl|CDD|151399 pfam10952, DUF2753, Protein of unknown function (DUF2753). This
bacterial family of proteins has no known function.
Length = 140
Score = 28.2 bits (63), Expect = 7.4
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 372 LRDIAFNTIAASGPHAAIIHYQ-ATVQSNRLLQKDELLLLDSGAQYV---NGTTDITRTI 427
L D A P +I+HYQ A +S L + +E L D V + D R
Sbjct: 7 LADEALK---NGDPLRSILHYQQALAESQELDESNEDELEDLLTIKVISCHNLADFWR-- 61
Query: 428 AIGDVDYEKKY 438
A GD +YE KY
Sbjct: 62 AQGDPEYELKY 72
>gnl|CDD|163338 TIGR03588, PseC, UDP-4-keto-6-deoxy-N-acetylglucosamine
4-aminotransferase. This family of enzymes are
aminotransferases of the pfam01041 family involved in
the biosynthesis of pseudaminic acid. They convert
UDP-4-keto-6-deoxy-N-acetylglucosamine into
UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic
acid has a role in surface polysaccharide in Pseudomonas
as well as in the modification of flagellin in
Campylobacter and Helicobacter species.
Length = 380
Score = 27.7 bits (62), Expect = 8.9
Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 35/116 (30%)
Query: 462 CDLDSIARIFLWKYGA----DFAHGVG-----HGVG----------SFLPVH-----EGP 497
D+ +IA + K+G D +H +G VG SF PV EG
Sbjct: 135 VDMQAIAAL-AKKHGLKIIEDASHALGAEYGGKPVGNCRYADATVFSFHPVKIITTAEG- 192
Query: 498 QGISRTNQEPLLPGMILSNEPGYYRCGAFGIRIENVLCVSEPETINNGECLMLGFN 553
G TN E L M L R + GI + +L + E E LGFN
Sbjct: 193 -GAVTTNDEELAERMRL------LR--SHGITKDPLLFEKQDEGPWYYEQQELGFN 239
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.139 0.422
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 10,189,353
Number of extensions: 675604
Number of successful extensions: 1165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1153
Number of HSP's successfully gapped: 21
Length of query: 609
Length of database: 5,994,473
Length adjustment: 99
Effective length of query: 510
Effective length of database: 3,855,281
Effective search space: 1966193310
Effective search space used: 1966193310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.9 bits)