RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780605|ref|YP_003065018.1| putative aminopeptidase
[Candidatus Liberibacter asiaticus str. psy62]
         (609 letters)



>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
           cytoplasm, hydrolase, manganese, metal-binding,
           metalloprotease, protease; HET: P6G; 1.60A {Homo
           sapiens}
          Length = 623

 Score =  544 bits (1402), Expect = e-155
 Identities = 216/625 (34%), Positives = 313/625 (50%), Gaps = 32/625 (5%)

Query: 10  SPSKTFERVHNLRS-----CFDSLGMDAFLVPRVDEYRGEFVDKGSERLAWLSGFTGSAG 64
            P  T E +  LR       + +  + A+++P  D ++ E++     R A++SGF GSAG
Sbjct: 2   PPKVTSELLRQLRQAMRNSEYVTEPIQAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAG 61

Query: 65  IAIVLRQKSVIFVDGRYTLQVEKEVDTALFTIKNIAIE--PLHAWISEHGFVGLRLGLDS 122
            AI+  + + ++ DGRY LQ  K++D+    +K    +      W+      G R+G+D 
Sbjct: 62  TAIITEEHAAMWTDGRYFLQAAKQMDSNWTLMKMGLKDTPTQEDWLVSVLPEGSRVGVDP 121

Query: 123 RLHSSFEVDLLQKSLDKIEGVIVDVPYNPIDSLWKDRPQRLYRKVAMQDMAYAGRESQEK 182
            +  +     + K L      ++ V  N +D +W DRP+R  + +    + Y G   ++K
Sbjct: 122 LIIPTDYWKKMAKVLRSAGHHLIPVKENLVDKIWTDRPERPCKPLLTLGLDYTGISWKDK 181

Query: 183 IRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEIFFDKQ 242
           + D+   + ++ V    +     IAW+FN+RG D+  +P   S AI+  +    +F D  
Sbjct: 182 VADLRLKMAERNVMWFVVTALDEIAWLFNLRGSDVEHNPVFFSYAIIGLET-IMLFIDGD 240

Query: 243 YIN-EQLKALLSAVAIVL--------DMDMMDSRLVCLARTSMP--ILIDPKWISYRFFK 291
            I+   +K  L     +             + S L  L     P   +      SY   +
Sbjct: 241 RIDAPSVKEHLLLDLGLEAEYRIQVHPYKSILSELKALCADLSPREKVWVSDKASYAVSE 300

Query: 292 VIAQKNGVMVEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSL-ETITE 350
            I  K+        P C+ +A KN  E EGM+ AHI+D VA+     W   +     +TE
Sbjct: 301 TI-PKDHRCCMPYTPICIAKAVKNSAESEGMRRAHIKDAVALCELFNWLEKEVPKGGVTE 359

Query: 351 IDIIKKLERCREEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLL 410
           I    K E  R +          D++F TI+++GP  AIIHY    ++NR L  DE+ L+
Sbjct: 360 ISAADKAEEFRRQQAD-----FVDLSFPTISSTGPTGAIIHYAPVPETNRTLSLDEVYLI 414

Query: 411 DSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARI 470
           DSGAQY +GTTD+TRT+        +K  FT VLKG I+VS A FP  T+G  LDS AR 
Sbjct: 415 DSGAQYKDGTTDVTRTMHFETPTAYEKECFTYVLKGHIAVSAAVFPTGTKGHLLDSFARS 474

Query: 471 FLWKYGADFAHGVGHGVGSFLPVHEGPQGISRT--NQEPLLPGMILSNEPGYYRCGAFGI 528
            LW  G D+ HG GHGVGSFL VHEGP GIS    + EPL  GMI+++EPGYY  GAFGI
Sbjct: 475 ALWDSGLDYLHGTGHGVGSFLNVHEGPCGISYKTFSDEPLEAGMIVTDEPGYYEDGAFGI 534

Query: 529 RIENVLCVSEPET-INNGECLMLGFNTLTLCPIDRKLILVELLTNEEKKWCNDYHRRVYT 587
           RIENV+ V   +T  N      L    LTL PI  K+I V+ LT++E  W N+YH     
Sbjct: 535 RIENVVLVVPVKTKYNFNNRGSLTLEPLTLVPIQTKMIDVDSLTDKECDWLNNYHLTCRD 594

Query: 588 SLAPLIEDQ---EVLSWLFSVTAPI 609
            +   ++ Q   E L WL   T PI
Sbjct: 595 VIGKELQKQGRQEALEWLIRETQPI 619


>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
           binding module, histone H3/H4 chaperone, PITA-bread
           fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
          Length = 444

 Score =  155 bits (393), Expect = 3e-38
 Identities = 38/301 (12%), Positives = 93/301 (30%), Gaps = 46/301 (15%)

Query: 300 MVEGSDPSCLLRATKNKVEIEGMQTA-HIQDGVAMVYFLFWF--YSQSLETITEIDIIKK 356
           +V+ S       A K++ E+  ++ A  +   V   YF+     Y    + IT      +
Sbjct: 164 LVDASLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQ 223

Query: 357 LERCREEIGCKMRNPLR---------DIAFNTIAASGPHAAIIHYQATVQSNRLLQKDEL 407
           +E   +         L+         +  +  I  SG    +        ++      ++
Sbjct: 224 MESLIDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPS---AITDDRNLHGDV 280

Query: 408 LLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSI 467
           +L   G +Y +  +++ RT        E++  ++ ++     +            D+ + 
Sbjct: 281 VLCSLGFRYKSYCSNVGRTYLFDPDS-EQQKNYSFLVALQKKLFEYCRD-GAVIGDIYTK 338

Query: 468 ARIFLWK----YGADFAHGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPG---- 519
               +         +F   +G G+G  +   E    ++  N   L  GM L+   G    
Sbjct: 339 ILGLIRAKRPDLEPNFVRNLGAGIG--IEFRESSLLVNAKNPRVLQAGMTLNLSIGFGNL 396

Query: 520 ------YYRCGAFGIRIENVLCVSEPETINNGECLMLGFNTLTLCPIDRKLILVELLTNE 573
                   +   + + + + + ++                  T  P  +    +     E
Sbjct: 397 INPHPKNSQSKEYALLLIDTIQITRS-----------DPIVFTDSP--KAQGDISYFFGE 443

Query: 574 E 574
           +
Sbjct: 444 D 444


>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
           replication, activator, chromosomal protein, coiled
           coil, DNA damage; 1.73A {Saccharomyces cerevisiae} PDB:
           3bip_A 3bit_A*
          Length = 467

 Score =  145 bits (367), Expect = 2e-35
 Identities = 62/476 (13%), Positives = 138/476 (28%), Gaps = 76/476 (15%)

Query: 151 PID-SLWKDRPQRLYRKVAMQDMAYAGRESQEKIRDICKILHQKEVGAVFICDPSSIAWI 209
            ID  ++K R + LY K           E +     +  +L        +        W+
Sbjct: 7   NIDFDVFKKRIELLYSKY---------NEFEGSPNSLLFVLGSSNAENPYQKTTILHNWL 57

Query: 210 FNIRGFDIPCSPYPLSR---AILYADGKAEIFFDKQYINEQLKALLS----------AVA 256
                ++ P +   L      I+ +  KA+       + +  ++ ++             
Sbjct: 58  L---SYEFPATLIALVPGKVIIITSSAKAKHLQKAIDLFKDPESKITLELWQRNNKEPEL 114

Query: 257 IVLDMDMMDSRLVCLARTSMPILIDPKWIS-----YRFFKVIAQKNGV-MVEGSDPSCLL 310
                D + + +    +T      D             ++   ++N   +++ S     +
Sbjct: 115 NKKLFDDVIALINSAGKTVGIPEKDSYQGKFMTEWNPVWEAAVKENEFNVIDISLGLSKV 174

Query: 311 RATKNKVEIEGMQTAHIQDGVAMVYFLFWFYS--QSLETITEIDIIKKLERCREE----- 363
              K+  E   +  +       M                IT   +  K+E   ++     
Sbjct: 175 WEVKDVNEQAFLSVSSKGSDKFMDLLSNEMVRAVDEELKITNAKLSDKIENKIDDVKFLK 234

Query: 364 -----------IGCKMRNPLRDIAFNTIAASGPHAAI-IHYQATVQSNRLLQKDELLLLD 411
                         K    L D  ++ I  SG    + +  ++T   N  L  +  +L  
Sbjct: 235 QLSPDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARST---NDQLYGNGCILAS 291

Query: 412 SGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIF 471
            G +Y N  ++ITRT  I D   E    +  +L     + T          ++      +
Sbjct: 292 CGIRYNNYCSNITRTFLI-DPSEEMANNYDFLLTLQKEIVTNILKPGRTPKEVYESVIEY 350

Query: 472 LWK----YGADFAHGVGHGVGSFLPVHEGPQGI-SRTNQEPLLPGMILSNEPGYY----- 521
           + K       +F   +G  +G  L   +    +  + +   +  G   +   G+      
Sbjct: 351 IEKTKPELVPNFTKNIGSLIG--LEFRDSNFILNVKNDYRKIQRGDCFNISFGFNNLKDS 408

Query: 522 -RCGAFGIRIENVLCVSEPETINNGECLMLGFNTLTLCPIDRKLILVELLTNEEKK 576
                + +++ + + +      +  E        LT     +  I       EE  
Sbjct: 409 QSANNYALQLADTVQIPL----DETEP----PRFLTNYTKAKSQISFYFNNEEEDN 456



 Score = 30.6 bits (68), Expect = 0.92
 Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 8/93 (8%)

Query: 15  FERVHNLRSCFD--SLGMDAFLV---PRVDEYRGEFVDKGSERLAWLSGFTGSAGIAIVL 69
            +R+  L S ++      ++ L        E   +   K +    WL  +   A +  ++
Sbjct: 14  KKRIELLYSKYNEFEGSPNSLLFVLGSSNAENPYQ---KTTILHNWLLSYEFPATLIALV 70

Query: 70  RQKSVIFVDGRYTLQVEKEVDTALFTIKNIAIE 102
             K +I         ++K +D        I +E
Sbjct: 71  PGKVIIITSSAKAKHLQKAIDLFKDPESKITLE 103


>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, structural genomics,
           center for structural genomics of infectious diseases;
           HET: SO4; 2.89A {Bacillus anthracis}
          Length = 427

 Score =  142 bits (359), Expect = 2e-34
 Identities = 60/240 (25%), Positives = 99/240 (41%), Gaps = 27/240 (11%)

Query: 310 LRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCKMR 369
           LR  K   EIE ++ A       +   L          + E ++  + +   +  G K  
Sbjct: 168 LRVFKTDEEIEIIKEAIAVTKDGIYNVLKHAK----ADMMEYELEAQFDFTLKSSGIKH- 222

Query: 370 NPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTI-A 428
                 AFNTI ASG +A ++HY+    ++  +Q  +L+LLD GAQ      DI+ T  A
Sbjct: 223 -----HAFNTILASGKNATVLHYED---NDAQIQNGDLVLLDLGAQKDYYNADISYTFPA 274

Query: 429 IGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWKYG---------ADF 479
            G     +K  + +VL  +   +    P   +   L+  A+  L +            + 
Sbjct: 275 NGTFSSRQKQIYNIVLNALKETTEIIKP-GLKFAALNEHAKKVLAEGCKAVGLIQEDEEL 333

Query: 480 AHGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPGYYRCG-AFGIRIENVLCVSE 538
           +    HGV  FL        +       L  GM+++ EPG Y    + GIRIE+ + V++
Sbjct: 334 SKYYYHGVSHFL--GLDTHDVGTYKDRVLEEGMVITIEPGLYIEEESIGIRIEDDILVTK 391


>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
           2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
          Length = 402

 Score =  142 bits (358), Expect = 2e-34
 Identities = 55/405 (13%), Positives = 122/405 (30%), Gaps = 40/405 (9%)

Query: 178 ESQEKIRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEI 237
           E   +   +   + + ++ AV      +I +     G+      +    A +  + KA  
Sbjct: 23  EMTRRZBRLRAWMAKSBIDAVLFTSYHNINYY---SGWLY--CYFGRKYAZVIBZVKAVT 77

Query: 238 FFDKQYINEQLKALLSAVAIVLD--MDMMDSRLVCLARTSMPILIDPKWISYRFFKVIAQ 295
                      +       +  D   D   S +  L + +  I I+   ++    + + +
Sbjct: 78  ISKGIDGGMPWRRSFGBNIVYTDWKRDNFYSAVKKLVKGAKZIGIEHDHVTLBHRRZLZK 137

Query: 296 K--NGVMVEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSLETITEIDI 353
                  V+  +P    R  K+  E + ++       +                + E ++
Sbjct: 138 ALPGTEFVDVGZPVMWZRVIKSSEEZBLIRZGARISDIGGAATAAAIS----AGVPEYEV 193

Query: 354 IKKLERCREEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSG 413
                        +    +  +       SG +    H   T   BR++Z+ ++L L+  
Sbjct: 194 AIATTBAMVRZIARBFPYVELMDTWIWFQSGINTDGAHNPVT---BRVVZRGDILSLNCF 250

Query: 414 AQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLW 473
                  T + RT+ + +VB      +               P   R  D+ S       
Sbjct: 251 PMIFGYYTALERTLFLZZVBDASLZIWZKNTAVHRRGLZLIKPG-ARCKDIASELNBMYR 309

Query: 474 K--YGADFAHGVGHGVGSFLPVHEGPQG----ISRTNQEPLLPGMILSNEPGYYRC---- 523
           +         G GH  G  +  H   +     +    Z  L PGM++S EP         
Sbjct: 310 ZWDLLRYRTFGYGHSFG--VLBHYYGREAGVELREDIZTVLEPGMVVSMEPMVMBPEGEP 367

Query: 524 GAFGIRIENVLCVSEPETINNGECLMLGFNTLTLCPIDRKLILVE 568
           GA G R  ++L + E                +T  P   +  +++
Sbjct: 368 GAGGYREHDILVIKEN-----------BTENITGFPFGPEHNIIK 401


>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
           structural genomics/proteomics initiative, RSGI,
           hydrolase; 1.70A {Pyrococcus horikoshii OT3} PDB: 1pv9_A
          Length = 351

 Score =  124 bits (312), Expect = 4e-29
 Identities = 85/388 (21%), Positives = 160/388 (41%), Gaps = 43/388 (11%)

Query: 180 QEKIRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEIFF 239
            EK++ I + + +  + AV I    ++ +I          SP      ++  +    ++ 
Sbjct: 5   NEKVKKIIEFMDKNSIDAVLIAKNPNVYYISG-------ASPLAGGYILITGESAT-LYV 56

Query: 240 DKQYINEQLKALLSAVAIVLDMDMMDSRLVCLARTSMPILIDPKWISYRFFKVIAQKNGV 299
            +       +     V     MD     L  +    +   +   +I     K   ++   
Sbjct: 57  PELEYEMAKEESNIPVEKFKKMDEFYKALEGIKSLGIESSLPYGFIEELKKKANIKEFKK 116

Query: 300 MVEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSLETITEIDIIKKLER 359
           + +      ++++ K    IE       +  +A +  +     +              E 
Sbjct: 117 VDDVIRDMRIIKSEKEIKIIEKACEIADKAVMAAIEEITEGKKER-------------EV 163

Query: 360 CREEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNG 419
             +       N     AF+TI ASG  +A+ H      S++ +++ +L+++D GA Y + 
Sbjct: 164 AAKVEYLMKMNGAEKPAFDTIIASGYRSALPHGV---ASDKRIERGDLVVIDLGALYQHY 220

Query: 420 TTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWK--YGA 477
            +DITRTI +G  + ++K  + +VL+       +  P      +LDSIAR  + +  YG 
Sbjct: 221 NSDITRTIVVGSPNEKQKEIYEIVLEAQKKAVESAKPG-ITAKELDSIARNIIAEYGYGE 279

Query: 478 DFAHGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPGYYRCGAFGIRIENVLCVS 537
            F H +GHGVG  L VHE P+ +S+ ++  L  GM+++ EPG Y     G+RIE+ + ++
Sbjct: 280 YFNHSLGHGVG--LEVHEWPR-VSQYDETVLREGMVITIEPGIYIPKIGGVRIEDTILIT 336

Query: 538 EPETINNGECLMLGFNTLTLCPIDRKLI 565
           +            G   LT     R+LI
Sbjct: 337 KN-----------GSKRLTKTE--RELI 351



 Score = 35.4 bits (80), Expect = 0.039
 Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 13/76 (17%)

Query: 16 ERVHNLRSCFDSLGMDAFLVPRVDEYRGEFVDKGSERLAWLSGFTG-SAGIAIVLRQKSV 74
          E+V  +    D   +DA L+ +               + ++SG +  + G  ++  + + 
Sbjct: 6  EKVKKIIEFMDKNSIDAVLIAKNPN------------VYYISGASPLAGGYILITGESAT 53

Query: 75 IFVDGRYTLQVEKEVD 90
          ++V        ++E +
Sbjct: 54 LYVPELEYEMAKEESN 69


>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
          Length = 359

 Score =  117 bits (294), Expect = 5e-27
 Identities = 93/391 (23%), Positives = 150/391 (38%), Gaps = 37/391 (9%)

Query: 181 EKIRDICKILHQKEVGAVFICDPSSIAWI--FNIRGFDIPCSPYPLSRAILYADGKAEIF 238
           ++   + +++ ++ + A  I +  + A        GF    S       IL ++    + 
Sbjct: 2   DRSERLIQLISEEGIDAFLIMNIENSARASSVYFSGFTGSFS------IILISENTRLLI 55

Query: 239 FDKQYINEQLKALLSAVAIVLDMDMMDSRLVCLARTSMPILIDPKWISYRFFKVIAQKNG 298
            D +Y   Q K         +        L           I  +             + 
Sbjct: 56  TDSRYT-VQAKQETDFEVREVKGGDFIDVLKKTVNDLKIKTIALEEERVSLSLFRRISSA 114

Query: 299 VMVEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSLETITEIDIIKKLE 358
                             V+ EG      Q              Q    +TE +I   LE
Sbjct: 115 FGDRKFIGIDDEVKQMRMVKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLE 174

Query: 359 RCREEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVN 418
               + G +         F+TI ASG  +A+ H +A+   ++++++ +++++D GA Y N
Sbjct: 175 YTMRKEGAEGVA------FDTIVASGCRSALPHGKAS---DKVVERGDVIVIDFGATYEN 225

Query: 419 GTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWK--YG 476
              DITR ++IG+   E K   ++VL+               G  LDS+AR F+ +  YG
Sbjct: 226 YCADITRVVSIGEPSDEVKEVHSIVLEAQERA-LKIAKAGVTGKLLDSVAREFIREKGYG 284

Query: 477 ADFAHGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPGYYRCGAFGIRIENVLCV 536
             F H +GHG+G  L VHEGP  IS  N  PL   ++ + EPG Y  G FGIRIE  + +
Sbjct: 285 EFFGHSLGHGIG--LEVHEGPA-ISFRNDSPLPENVVFTVEPGIYLEGKFGIRIEEDVVL 341

Query: 537 SEPETINNGECLMLGFNTLTLCPIDRKLILV 567
            E            G   LT  P  R + +V
Sbjct: 342 KEQ-----------GCEILTTLP--RSIFVV 359



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 16  ERVHNLRSCFDSLGMDAFLVPRVDEYRGEFVDKGSERLAWLSGFTGSAGIAIVLRQKSVI 75
           +R   L       G+DAFL+  ++               + SGFTGS  I ++     ++
Sbjct: 2   DRSERLIQLISEEGIDAFLIMNIENSARA-------SSVYFSGFTGSFSIILISENTRLL 54

Query: 76  FVDGRYTLQVEKEVDTALFTIKNIAIEPLHAWISEH 111
             D RYT+Q ++E D  +  +K      +       
Sbjct: 55  ITDSRYTVQAKQETDFEVREVKGGDFIDVLKKTVND 90


>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
           structural genomics/proteomics initiative, RSGI,
           hydrolase; 2.25A {Pyrococcus horikoshii OT3} PDB: 2how_A
          Length = 356

 Score =  115 bits (288), Expect = 2e-26
 Identities = 85/371 (22%), Positives = 141/371 (38%), Gaps = 30/371 (8%)

Query: 182 KIRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEIFFDK 241
           ++     +L ++      I   +++ ++  +R  ++      L    + A+G    F   
Sbjct: 2   RLEKFIHLLGERGFDGALISPGTNLYYLTGLRLHEVGERLAIL---AVSAEGDY-RFLAP 57

Query: 242 QYINEQLKALLSAVAIVLDMDMMD--SRLVCLARTSMPILIDPKWISYRFFKVIAQKNGV 299
                 +    +      +         L  L  +   ILI+    +     ++      
Sbjct: 58  SLYENVVNNFPATFWHDGENPYAKLREILEELGISKGRILIEDTMRADWLIGIMKLGKFT 117

Query: 300 MVEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSLETITEIDIIKKLER 359
               S     LR  K+K E++ M+ A           L W                K   
Sbjct: 118 FQPLSSLIKELRMIKDKEEVKMMEHASRIADKVFEEILTWDLIG-----------MKERE 166

Query: 360 CREEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNG 419
              +I   +R     IAF  I ASG +AA  H++   +     +K ++++LD GA++   
Sbjct: 167 LALKIELLIRELSDGIAFEPIVASGENAANPHHEPGERKI---RKGDIIILDYGARWKGY 223

Query: 420 TTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWKYG--A 477
            +DITRTI +G+   E+      V+K     +     +  +  D+DS AR  + K G   
Sbjct: 224 CSDITRTIGLGE-LDERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAREVISKAGYGE 282

Query: 478 DFAHGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPGYYRCGAFGIRIENVLCVS 537
            F H  GHG+G  L VHE P  I    +  L  GM  + EPG Y  G  G+RIE+ + V 
Sbjct: 283 YFIHRTGHGLG--LDVHEEPY-IGPDGEVILKNGMTFTIEPGIYVPGLGGVRIEDDIVVD 339

Query: 538 EPETINNGECL 548
           E      G  L
Sbjct: 340 E----GKGRRL 346


>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
           SCOP: c.55.2.1 d.127.1.1
          Length = 401

 Score =  112 bits (280), Expect = 3e-25
 Identities = 55/401 (13%), Positives = 113/401 (28%), Gaps = 33/401 (8%)

Query: 172 MAYAGRESQEKIRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYA 231
             ++ +E   +   +   L  + + A       +I +  +       CS       ++  
Sbjct: 16  STFSAQEYANRQARLRAHLAAENIDAAIFTSYHNINYYSDFLY----CSFGRPYALVVTE 71

Query: 232 DGKAEIFFDKQYINEQLKALLSAVAIVLDMDMMDSRLVCLARTSMPILI----DPKWISY 287
           D    I  +        + + +   +  D    +              I    D   +  
Sbjct: 72  DDVISISANIDGGQPWRRTVGTDNIVYTDWQRDNYFAAIQQALPKARRIGIEHDHLNLQN 131

Query: 288 RFFKVIAQKNGVMVEGSDPSCLLRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSLET 347
           R        +  +V+ +     +R  K+  E   ++       +     +     Q    
Sbjct: 132 RDKLAARYPDAELVDVAAACMRMRMIKSAEEHVMIRHGARIADIGGAAVVEALGDQ---- 187

Query: 348 ITEIDIIKKLERCREEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDEL 407
           + E ++     +            +  +   T   SG +    H   T +      K ++
Sbjct: 188 VPEYEVALHATQAMVRAIADTFEDVELMDTWTWFQSGINTDGAHNPVTTRKV---NKGDI 244

Query: 408 LLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSI 467
           L L+         T + RT+ +     +    + + ++   +      P          +
Sbjct: 245 LSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIAREL 304

Query: 468 ARIFL-WKYGADFAHGVGHGVGSFL--PVHEGPQGISRTNQEPLLPGMILSNEPGYY--- 521
             IFL          G GH  G+       E    +       L PGM++S EP      
Sbjct: 305 NEIFLKHDVLQYRTFGYGHSFGTLSHYYGREAGLELREDIDTVLEPGMVVSMEPMIMLPE 364

Query: 522 -RCGAFGIRIENVLCVSEPETINNGECLMLGFNTLTLCPID 561
              GA G R  ++L V+E            G   +T  P  
Sbjct: 365 GLPGAGGYREHDILIVNEN-----------GAENITKFPYG 394


>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
           manganese, metal-binding, metalloprotease, protease;
           2.30A {Alteromonas SP}
          Length = 517

 Score =  110 bits (276), Expect = 7e-25
 Identities = 64/451 (14%), Positives = 133/451 (29%), Gaps = 105/451 (23%)

Query: 169 MQDMA--YAGR--ESQEKIRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPY-- 222
           M  +A  YA      Q++ R   +I+ ++ +  V      +     +   +    +P   
Sbjct: 1   MNKLAVLYAEHIATLQKRTR---EIIERENLDGVVFHSGQAKRQFLDDMYYPFKVNPQFK 57

Query: 223 --------PLSRAILYADGKAEIFF--DKQYINEQLKALLSA------VAIVLDMDMMDS 266
                   P    +     K ++ F     + ++              + +++  D ++ 
Sbjct: 58  AWLPVIDNPHCWIVANGTDKPKLIFYRPVDFWHKVPDEPNEYWADYFDIELLVKPDQVEK 117

Query: 267 RLVCLARTSMPILIDPKWISYRFFKVIAQKNGVMVEGSDPSCLLRATKNKVEIEGMQTAH 326
            L         I    +      F+++  +  +     +     RA K + E+  M+ A+
Sbjct: 118 LLPYDKARFAYIGEYLEVAQALGFELMNPEPVM-----NFYHYHRAYKTQYELACMREAN 172

Query: 327 IQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCKMRNPLRDIAFNTIAASGPH 386
                        F+    +  +E +I +      +           D  +  I A   +
Sbjct: 173 KIAVQGHKAARDAFF----QGKSEFEIQQAYLLATQHSEN-------DNPYGNIVALNEN 221

Query: 387 AAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKG 446
            AI+HY                L+D+GA +     DITRT          +   T + + 
Sbjct: 222 CAILHYTHFD--RVAPATHRSFLIDAGANFNGYAADITRTYDFTGEGEFAELVAT-MKQH 278

Query: 447 MISVSTARFPQRT----------------RGCDLDSIARIFLWK---YGADFAHGVGHGV 487
            I++     P +                    ++  ++   +         F HG+GH +
Sbjct: 279 QIALMNQLAPGKLYGELHLDCHQRVAQTLSDFNIVDLSADEIVAKGITSTFFPHGLGHHI 338

Query: 488 GSFLPVHEGPQGIS---------------RTNQEPLLPGMILSNEPGYYRCGAF------ 526
           G  L VH+    ++                     +    + + EPG Y   +       
Sbjct: 339 G--LQVHDVGGFMADEQGAHQEPPEGHPFLRCTRKIEANQVFTIEPGLYFIDSLLGDLAA 396

Query: 527 -------------------GIRIENVLCVSE 538
                              GIRIE+ + V E
Sbjct: 397 TDNNQHINWDKVAELKPFGGIRIEDNIIVHE 427


>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
           infectious disease, S aminopeptidase, protease,
           epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
           3mr1_A
          Length = 262

 Score =  100 bits (251), Expect = 1e-21
 Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 61/261 (23%)

Query: 314 KNKVEIEGMQTA-------------HIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERC 360
             + +   M+ A             H++  V                 T   +       
Sbjct: 9   HTEKDFIKMRAAGKLAAETLDFITDHVKPNV-----------------TTNSLNDLCHNF 51

Query: 361 REEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGT 420
                     PL    F     +  +  + H      +++ L+  +++ +D         
Sbjct: 52  ITSHNAIP-APLNYKGFPKSICTSINHVVCHGIP---NDKPLKNGDIVNIDVTVILDGWY 107

Query: 421 TDITRTIAIGDVDYEKKYYFTLVLKGM-ISVSTARFPQRTRGCDLDSIARIFLWKYG-AD 478
            D +R   +GDV  + K    +    M   +   R     +  D+    + +  K+  + 
Sbjct: 108 GDTSRMYYVGDVAIKPKRLIQVTYDAMMKGIEVVR--PGAKLGDIGYAIQSYAEKHNYSV 165

Query: 479 FAHGVGHGVGSFLPVHEGPQ---GISRTNQEPLLPGMILSNEPGYY-------------- 521
                GHG+G     H+ P             L  GM  + EP                 
Sbjct: 166 VRDYTGHGIG--RVFHDKPSILNYGRNGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGW 223

Query: 522 ----RCGAFGIRIENVLCVSE 538
               R  +   + E+ + V++
Sbjct: 224 TVTTRDKSLSAQFEHTIGVTK 244


>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
           protein structure initiative, joint center for
           structural genomics; 1.90A {Thermotoga maritima} SCOP:
           d.127.1.1
          Length = 262

 Score = 91.0 bits (225), Expect = 6e-19
 Identities = 43/250 (17%), Positives = 76/250 (30%), Gaps = 33/250 (13%)

Query: 311 RATKNKVEIEGMQTA-HIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCKMR 369
              K   EIE M+ A            L       +   T  D+   +    +++  K  
Sbjct: 14  IRIKTPSEIEKMKKAGKAVAVA-----LREVRKVIVPGKTAWDVETLVLEIFKKLRVKPA 68

Query: 370 NPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAI 429
                        S     +          ++ ++ +++ +D GA Y     D   T  +
Sbjct: 69  FKGYGGYKYATCVSVNEEVVHGL---PLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIV 125

Query: 430 GDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWKYGAD-FAHGVGHGVG 488
           G+ D   K    +  + +        P   R  D+    +  +   G +     VGHGVG
Sbjct: 126 GETDERGKELVRVTREVLEKAIKMIKP-GIRLGDVSHCIQETVESVGFNVIRDYVGHGVG 184

Query: 489 SFLPVHEGPQGI---SRTNQEPLLPGMILSNEPGYYRC-----------------GAFGI 528
               +HE PQ     +      L  GM L+ EP                      G+   
Sbjct: 185 --RELHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCA 242

Query: 529 RIENVLCVSE 538
             E+ + ++E
Sbjct: 243 HFEHTILITE 252


>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
           1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
           1qxw_A* 1qxz_A*
          Length = 252

 Score = 87.6 bits (216), Expect = 6e-18
 Identities = 44/248 (17%), Positives = 85/248 (34%), Gaps = 34/248 (13%)

Query: 314 KNKVEIEGMQTA-HIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCKMRNPL 372
           K + E++ ++   +I   V          + +   IT  ++    +   EE G     P+
Sbjct: 4   KTEEELQALKEIGYICAKV-----RNTMQAATKPGITTKELDNIAKELFEEYGAI-SAPI 57

Query: 373 RDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDV 432
            D  F        +  + H      S R++++ +L+ +D  A       D   +  +G+ 
Sbjct: 58  HDENFPGQTCISVNEEVAHGIP---SKRVIREGDLVNIDVSALKNGYYADTGISFVVGES 114

Query: 433 DYEKKYYFTLVLKGMISVSTARF-PQRTRGCDLDSIARIFLWKYGADFAHGVGHGVGSFL 491
           D   K     V       + A+  P         ++             +  GHGVG  L
Sbjct: 115 DDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVG--L 172

Query: 492 PVHEGPQGI----SRTNQEPLLPGMILSNEPGYY-----------------RCGAFGIRI 530
            +HE P  +       ++  L  GM+L+ EP                       +F  +I
Sbjct: 173 SLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQI 232

Query: 531 ENVLCVSE 538
           E+ + V++
Sbjct: 233 EHTVIVTK 240


>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
           enzyme, aminopeptidase P, manganese enzyme, protease,
           manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
           c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
           1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
           2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
           2bwu_A* 2bww_A* ...
          Length = 440

 Score = 84.0 bits (206), Expect = 9e-17
 Identities = 56/271 (20%), Positives = 101/271 (37%), Gaps = 47/271 (17%)

Query: 322 MQTAHIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCK--MRNPLRDIAFNT 379
           M+     + +A++       + +     E       E   E        R+  R  ++NT
Sbjct: 172 MRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNT 231

Query: 380 IAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAI-GDVDYEKKY 438
           I  SG +  I+HY    ++   ++  +L+L+D+G +Y     DITRT  + G     ++ 
Sbjct: 232 IVGSGENGCILHYT---ENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288

Query: 439 YFTLVLKGMISVSTARFPQRTRGCDLDSIARI-------------------FLWKYGADF 479
            + +VL+ + +      P  +       + RI                       +   F
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFF 348

Query: 480 AHGVGHGVGSFLPVHEGPQGISRTNQEPLLPGMILSNEPGYY---------RCGAFGIRI 530
            HG+ H +G  L VH+      +     L PGM+L+  PG Y         +    GIRI
Sbjct: 349 MHGLSHWLG--LDVHDVGV-YGQDRSRILEPGMVLTVAPGLYIAPDAEVPEQYRGIGIRI 405

Query: 531 ENVLCVSE----------PETINNGECLMLG 551
           E+ + ++E           +     E LM+ 
Sbjct: 406 EDDIVITETGNENLTASVVKKPEEIEALMVA 436


>3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2,
           protein structure initiative, MI center for structural
           genomics, MCSG; 2.00A {Streptococcus pyogenes}
          Length = 132

 Score = 73.8 bits (181), Expect = 9e-14
 Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 18/140 (12%)

Query: 16  ERVHNLRSCFDSLGMDAFLVPRVDEYRGEFVDKGSERLAWLSGFTGSAGIAIVLRQKSVI 75
           +R+ +        G++A LV                   +L+GF+G+A   ++  ++ V+
Sbjct: 10  QRLGHCLRQMAEKGLEALLVTH------------LTNSYYLTGFSGTAATVLITAKRRVL 57

Query: 76  FVDGRYTLQVEKEVDTALFTIKNIAIEPLHAWISEHGFVGLRLGLDSRLHSSFEVDLLQK 135
             D RYTL  +  V+          ++ +   +         LG + ++ S      +Q 
Sbjct: 58  ITDSRYTLLAKASVEGFDIIESRTPLKVVAELLEAD--QIDCLGFEDQV-SFSFYQAMQA 114

Query: 136 SLDKIEGVIVDVPYNPIDSL 155
            L  I   ++      ++ L
Sbjct: 115 ELSGIT--LLAQS-GFVEHL 131



 Score = 27.9 bits (62), Expect = 6.9
 Identities = 12/118 (10%), Positives = 44/118 (37%), Gaps = 12/118 (10%)

Query: 180 QEKIRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEIFF 239
           ++++    + + +K + A+ +   ++  ++    G     +       ++ A  +  +  
Sbjct: 9   EQRLGHCLRQMAEKGLEALLVTHLTNSYYLTGFSG-----TAA---TVLITAK-RRVLIT 59

Query: 240 DKQYINEQLKALLSAVAIVLDMDMMDS-RLVCLARTSMPILIDPKWISYRFFKVIAQK 296
           D +Y     KA +    I+     +     +  A     +  +   +S+ F++ +  +
Sbjct: 60  DSRYT-LLAKASVEGFDIIESRTPLKVVAELLEADQIDCLGFED-QVSFSFYQAMQAE 115


>3iu7_A Methionine aminopeptidase; enzyme-inhibitor complex, cobalt,
           hydrolase, metal-binding, protease; HET: FCD; 1.40A
           {Mycobacterium tuberculosis} PDB: 3iu8_A* 3iu9_A* 1y1n_A
           1yj3_A
          Length = 288

 Score = 68.7 bits (167), Expect = 4e-12
 Identities = 35/249 (14%), Positives = 73/249 (29%), Gaps = 32/249 (12%)

Query: 311 RATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCKMRN 370
              +    IE M+ A      A+              +T  ++ +       + G     
Sbjct: 42  PWVQTPEVIEKMRVAGRIAAGALAEAG----KAVAPGVTTDELDRIAHEYLVDNGAYPS- 96

Query: 371 PLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIG 430
            L    F     +  +  I H    +  + ++   +++ +D  A       D   T   G
Sbjct: 97  TLGYKGFPKSCCTSLNEVICHG---IPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAG 153

Query: 431 DVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWKYGAD-FAHGVGHGVGS 489
           DV  E +       +  +       P       +  +   +  ++G +      GHG+G+
Sbjct: 154 DVADEHRLLVDRTREATMRAINTVKP-GRALSVIGRVIESYANRFGYNVVRDFTGHGIGT 212

Query: 490 FLPVHEGPQ---GISRTNQEPLLPGMILSNEPGYY-----------------RCGAFGIR 529
               H G           +  + PGM  + EP                    +   +  +
Sbjct: 213 T--FHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQ 270

Query: 530 IENVLCVSE 538
            E+ L V++
Sbjct: 271 FEHTLLVTD 279


>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics, PSI,
           MCSG, protein structure initiative; HET: GOL; 2.20A
           {Streptococcus thermophilus lmg 18311}
          Length = 131

 Score = 66.6 bits (162), Expect = 1e-11
 Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 18/140 (12%)

Query: 16  ERVHNLRSCFDSLGMDAFLVPRVDEYRGEFVDKGSERLAWLSGFTGSAGIAIVLRQKSVI 75
            R+    +     G+DA LV                 + +L+ F G+     + + + + 
Sbjct: 6   RRLERFDAKLVQSGLDALLVTG------------QNNIYYLTDFWGTNATVFITKNRRLF 53

Query: 76  FVDGRYTLQVEKEVDTALFTIKNIAIEPLHAWISEHGFVGLRLGLDSRLHSSFEVDLLQK 135
             D RYTL  ++ V           ++ +  ++         +G D+++ S      LQ 
Sbjct: 54  LTDSRYTLIAKQSVHGFDIIESKDPLKDIVKFVEVDK--LETIGFDNQV-SFAYYQALQA 110

Query: 136 SLDKIEGVIVDVPYNPIDSL 155
             +     +     N ++ L
Sbjct: 111 IFEGYT--LSPQT-NFMEEL 127


>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
           antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
           coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A*
           2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A*
           2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A*
           3mat_A* 1yvm_A* 2mat_A ...
          Length = 263

 Score = 65.7 bits (159), Expect = 3e-11
 Identities = 32/245 (13%), Positives = 73/245 (29%), Gaps = 28/245 (11%)

Query: 314 KNKVEIEGMQTA-HIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCKMRNPL 372
           K   +IE M+ A  +   V     L          ++  ++ +            +   L
Sbjct: 5   KTPEDIEKMRVAGRLAAEV-----LEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACL 59

Query: 373 RDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDV 432
               +        +  + H        +LL+  +++ +D          D ++   +G  
Sbjct: 60  GYHGYPKSVCISINEVVCHGIPD--DAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKP 117

Query: 433 DYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWKYG-ADFAHGVGHGVG-SF 490
               +    +  + +        P      ++ +  + F+   G +      GHG+G  F
Sbjct: 118 TIMGERLCRITQESLYLALRMVKPGINL-REIGAAIQKFVEAEGFSVVREYCGHGIGRGF 176

Query: 491 LPVHEGPQGISRTNQEPLLPGMILSNEPGYY-----------------RCGAFGIRIENV 533
               +     SR     L PGM  + EP                    +  +   + E+ 
Sbjct: 177 HEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHT 236

Query: 534 LCVSE 538
           + V++
Sbjct: 237 IVVTD 241


>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
           acetylation, peptidase D, polymorphism, collagen
           degradation, metalloaminopeptidase; 1.82A {Homo sapiens}
           PDB: 2okn_A
          Length = 494

 Score = 60.9 bits (146), Expect = 8e-10
 Identities = 56/325 (17%), Positives = 96/325 (29%), Gaps = 78/325 (24%)

Query: 310 LRATKNKVEIEGMQTAHIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCKMR 369
            R  K  +E+E ++  +     A    +        E         +LE   E       
Sbjct: 184 CRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKE--------YELESLFEHYCYSRG 235

Query: 370 NPLRDIAFNTIAASGPHAAIIHY-QATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIA 428
              R  ++  I  SG ++A++HY  A   ++R +Q  ++ L D G +Y    +DIT +  
Sbjct: 236 GM-RHSSYTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFP 294

Query: 429 IGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWK-------------- 474
                   +      +                  D+  +A     +              
Sbjct: 295 ANGKFTADQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDA 354

Query: 475 ------YGADFAHGVGHGVGSFLPVH----------EGPQGISRTNQEPLLPGMILSNEP 518
                       HG+GH +G  +             + P   S      L PGM+L+ EP
Sbjct: 355 MVQAHLGAVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQPGMVLTVEP 414

Query: 519 GYYRC--------------------------GAFGIRIENVLCVSEPETINNGECLMLGF 552
           G Y                            G  G+RIE  + V++            G 
Sbjct: 415 GIYFIDHLLDEALADPARASFFNREVLQRFRGFGGVRIEEDVVVTDS-----------GI 463

Query: 553 NTLTLCPIDRKLILVELLTNEEKKW 577
             LT  P   + I    +   +K +
Sbjct: 464 ELLTCVPRTVEEI-EACMAGCDKAF 487


>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
           {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
           1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
           1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
           2ga2_A* 2oaz_A*
          Length = 478

 Score = 60.1 bits (145), Expect = 1e-09
 Identities = 25/178 (14%), Positives = 48/178 (26%), Gaps = 10/178 (5%)

Query: 348 ITEIDIIKKLERCREEIGCKMRNPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDEL 407
           +T I+I +KLE C  ++  K       +AF T      +    HY        +LQ D++
Sbjct: 191 MTMIEICEKLEDCSRKLI-KENGLNAGLAFPTGC--SLNNCAAHYTPNAGDTTVLQYDDI 247

Query: 408 LLLDSGAQYVNGTTDITRTIAIGDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSI 467
             +D G        D   T+                    I  +         G  +  +
Sbjct: 248 CKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEV 307

Query: 468 ARIFLW-KYGADFAHGVGHGVGSFL---PVHEGPQGI---SRTNQEPLLPGMILSNEP 518
              +     G  +       +             + +          +  G + + E 
Sbjct: 308 MESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIVKGGEATRMEEGEVYAIET 365


>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitabread
           fold; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A
           2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
          Length = 329

 Score = 56.4 bits (135), Expect = 2e-08
 Identities = 38/245 (15%), Positives = 74/245 (30%), Gaps = 30/245 (12%)

Query: 314 KNKVEIEGMQTA-HIQDGVAMVYFLFWFYSQSLETITEIDIIKKLERCREEIGCKMRNPL 372
            +  +IEGM+    +   V     L          +T  +I   +        C   +PL
Sbjct: 76  LSSEDIEGMRLVCRLAREV-----LDVAAGMIKPGVTTEEIDHAVHLACIARNCY-PSPL 129

Query: 373 RDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAIGDV 432
               F     +  +  I H    +   R LQ+ +++ +D          D+  T  +G+V
Sbjct: 130 NYYNFPKSCCTSVNEVICHG---IPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEV 186

Query: 433 DYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWK--YGADFAHGVGHGVGSF 490
           D   +       + ++    A  P   R  +L +I +       +    ++        F
Sbjct: 187 DDGARKLVQTTYECLMQAIDAVKP-GVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLF 245

Query: 491 LPVHEGPQGISRTNQEPLLPGMILSNEPGYY-----------------RCGAFGIRIENV 533
                 P          +  G + + EP                    R G    + E+ 
Sbjct: 246 HTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHT 305

Query: 534 LCVSE 538
           L V++
Sbjct: 306 LLVTD 310


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 51.1 bits (122), Expect = 7e-07
 Identities = 83/525 (15%), Positives = 141/525 (26%), Gaps = 228/525 (43%)

Query: 8   KSSPSKTFERVH--------------NLRSCFDSLGMDAFLVPRVDEYR---GEFVDKGS 50
           K S S  F  V               N    F+ L  D +       Y    G+ +   +
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL-RDLY-----QTYHVLVGDLIKFSA 192

Query: 51  ERL---------------------AWLSG--------FTGSAGIA---IVLRQKSVIFVD 78
           E L                      WL          +  S  I+   I + Q       
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ----LA- 247

Query: 79  GRYTLQVEKEVDTALFTIKNIAIEPLHAWISEHGFVG-LRLGLDSRL-----HSSFEVDL 132
             Y +           T K +   P           G LR    S L     HS      
Sbjct: 248 -HYVV-----------TAKLLGFTP-----------GELR----SYLKGATGHS------ 274

Query: 133 LQKSLDKIEGVIVDVPYNPIDSLWKDRPQRLYR--KVAMQDMAYAGRESQEKI--RDICK 188
            Q       G++  V     DS W+      +   + A+  + + G    E      +  
Sbjct: 275 -Q-------GLVTAVAIAETDS-WES----FFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321

Query: 189 ILHQKEV----GAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEIFFDKQYI 244
            + +  +    G      PS    + +I           L++  +      + + +K   
Sbjct: 322 SILEDSLENNEGV-----PS---PMLSISN---------LTQEQV------QDYVNK--T 356

Query: 245 NEQLKALLSAVAIVLDMDMMDSRLVCLARTSMPILIDPKWISYRFFKVIAQKNGVMVEGS 304
           N  L                  + V ++      L++      +   V++        G 
Sbjct: 357 NSHLP---------------AGKQVEIS------LVN----GAKNL-VVS--------GP 382

Query: 305 DPSCL------LRATKNKVEIEGMQTAHI---QDGVAMVY-FLFW---FYSQSLETITEI 351
            P  L      LR  K    ++  Q + I   +  +     FL     F+S  L   +++
Sbjct: 383 -PQSLYGLNLTLRKAKAPSGLD--Q-SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438

Query: 352 DIIKKLERCREEI-GCKMRNP---------LRDIAFNTIAASGPHA--AIIHYQATVQSN 399
            I K L +         ++ P         LR ++ +            II     V+  
Sbjct: 439 -INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS----ERIVDCIIR--LPVKWE 491

Query: 400 RLLQKDELLLLD------SG-----AQYVNGTTDITRTIAIGDVD 433
              Q     +LD      SG      +  +GT    R I  G +D
Sbjct: 492 TTTQFKATHILDFGPGGASGLGVLTHRNKDGTG--VRVIVAGTLD 534



 Score = 34.9 bits (80), Expect = 0.059
 Identities = 36/292 (12%), Positives = 67/292 (22%), Gaps = 138/292 (47%)

Query: 370 NPLRDIAFNTIAASGPHAAIIHYQATVQSNRLLQKDELLLLDSGAQYVNGTTDITRTIAI 429
           + L++  F       P       +     +      EL+      +++   + +      
Sbjct: 31  SQLQE-QF---NKILPEPT----EGFAADDEPTTPAELV-----GKFLGYVSSL------ 71

Query: 430 GDVDYEKKYYFTLVLKGMISVSTARFPQRTRGCDLDSIARIFLWKYGADFAHGVGHGVGS 489
             V+  K   F  VL     +    F +             +L   G D  H +      
Sbjct: 72  --VEPSKVGQFDQVLN----LCLTEF-ENC-----------YLE--GND-IHAL---AAK 107

Query: 490 FLPVHEGPQGISRTNQEPLLPGMILSNEPGYYR-CGAFGIRIENV----L--CVSEPE-- 540
            L  ++     ++          ++ N   Y           +      L   V E    
Sbjct: 108 LLQENDTTLVKTKE---------LIKN---YITARIMAKRPFDKKSNSALFRAVGEGNAQ 155

Query: 541 --TI-----NNGECLMLGFNTLTLCPIDRKLILVELLTNEEKKWCNDYHRRVYTSLAPLI 593
              I     N  +     F               EL             R +Y +   L+
Sbjct: 156 LVAIFGGQGNTDDY----FE--------------EL-------------RDLYQTYHVLV 184

Query: 594 ED---------QE-----------------VLSWL----------FSVTAPI 609
            D          E                 +L WL          + ++ PI
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236


>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metallo
           peptidase, creatinase/prolidase N-terminal domain,
           PSI-2; HET: MSE; 1.46A {Lactobacillus brevis atcc 367}
          Length = 140

 Score = 37.4 bits (86), Expect = 0.008
 Identities = 8/134 (5%), Positives = 29/134 (21%), Gaps = 20/134 (14%)

Query: 16  ERVHNLRSCFDSLGMDAFLVPRVDEYRGEFVDKGSERLAWLSGFTGS-----AGIAIVLR 70
            ++  ++            +               + + +L+GF          + +   
Sbjct: 4   TKLEQIQQWTAQHHASMTYL------------SNPKTIEYLTGFGSDPIERVLALVVFPD 51

Query: 71  QKSVIFVDGRYTLQVEKEVDTALFTIKNIAIEPLHAW---ISEHGFVGLRLGLDSRLHSS 127
           Q   IF        +++               P       + +       + ++      
Sbjct: 52  QDPFIFAPALEVEVIKETGWQFPVIGYLDHENPWAMIADQVKQRHVNPEHVAIEKGQLQV 111

Query: 128 FEVDLLQKSLDKIE 141
             ++ L        
Sbjct: 112 ARMEALAAQFSAPS 125


>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G
           midwest center for structural genomics; 1.85A
           {Streptococcus pyogenes m1 gas}
          Length = 132

 Score = 33.9 bits (77), Expect = 0.12
 Identities = 18/135 (13%), Positives = 39/135 (28%), Gaps = 18/135 (13%)

Query: 17  RVHNLRSCFDSLGMDAFLV--PRVDEYRGEFVDKGSERLAWLSGFTGSAGIAIVLRQKSV 74
           ++  +R   D  G +  +   P    Y   F     ER  +L          +      V
Sbjct: 4   KLDQIRLYLDQKGAELAIFSDPVTINYLTGFFCDPHERQLFLF---------VYHDLAPV 54

Query: 75  IFVDGRYTLQVEKEVDTALFTIKNI--AIEPLHAWISEHGFVGLRLGLDSRLHSSFEVDL 132
           +FV      +  + +   +F   +     E + A +         +  +    +  +   
Sbjct: 55  LFVPALEVARASQAISFPVFGYVDSENPWEKIKAVLPNTA--AKTIYAEFDHLNVNKFHG 112

Query: 133 LQKSLDKIEGVIVDV 147
           LQ       G   ++
Sbjct: 113 LQTIFS---GQFNNL 124


>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure
           initiative, MI center for structural genomics, MCSG,
           hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae}
          Length = 132

 Score = 32.0 bits (72), Expect = 0.36
 Identities = 15/126 (11%), Positives = 41/126 (32%), Gaps = 15/126 (11%)

Query: 17  RVHNLRSCFDSLGMDAFLV--PRVDEYRGEFVDKGSERLAWLSGFTGSAGIAIVLRQKSV 74
           +++ +R    S+  +  +   P    Y   F     ER  +L          +   +  +
Sbjct: 4   KLNRIRHHLHSVQAELAVFSDPVTVNYLTGFFCDPHERQMFLF---------VYEDRDPI 54

Query: 75  IFVDGRYTLQVEKEVDTALFTIKNI--AIEPLHAWISEHGFVGLRLGLDSRLHSSFEVDL 132
           +FV      + ++ V   +F   +     + + + +        ++  +    +  +   
Sbjct: 55  LFVPALEVSRAKQSVPFPVFGYIDSENPWQKIASNLPSFSV--SKVLAEFDNLNVTKFQG 112

Query: 133 LQKSLD 138
           LQ   D
Sbjct: 113 LQTVFD 118


>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel,
           biosynthetic protein; 2.21A {Lactococcus lactis subsp}
           SCOP: a.102.6.1 PDB: 2g02_A
          Length = 409

 Score = 31.0 bits (69), Expect = 0.87
 Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 4/113 (3%)

Query: 44  EFVDKGSERLAW--LSGFTGSAGIAIVLRQKSVIFVDGRYTLQVEKEVDTALFTIKNIAI 101
           E   K  E   +  L+  TG  GI ++L +         Y  +++  ++  +  +    +
Sbjct: 17  ERTRKNKENFDFGELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSKLSTYGL 76

Query: 102 EPLHAWISEHG--FVGLRLGLDSRLHSSFEVDLLQKSLDKIEGVIVDVPYNPI 152
                +    G     L L  D   + +    L +     +   I       I
Sbjct: 77  LTGSLYSGAAGIALSILHLREDDEKYKNLLDSLNRYIEYFVREKIEGFNLENI 129


>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic
           membrane protein, sensory transduction, vision,
           isomerase, non-heme iron protein; 1.90A {Bos taurus}
           PDB: 3fsn_A
          Length = 533

 Score = 29.8 bits (66), Expect = 1.8
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 10/57 (17%)

Query: 301 VEGSDPSCL----LRATKNKVEIEGMQTAHIQDGVAMVY-FLF-----WFYSQSLET 347
           V G  P  L    LR      E+      H+ DG A+++ F F      ++ + + T
Sbjct: 30  VTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTYHRRFIRT 86


>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein;
           2.60A {Homo sapiens} PDB: 3e73_A*
          Length = 411

 Score = 29.8 bits (66), Expect = 2.0
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 3/93 (3%)

Query: 57  SGFTGSAGIAIVLRQKSVIFVDGRYTLQVEKEVDTALFTIKNIAIEPLHAWISEHGFVGL 116
           +G+TG AGIA++      +F D  Y       V  +L  +   +I  L       G + +
Sbjct: 72  TGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLCGDA---GPLAV 128

Query: 117 RLGLDSRLHSSFEVDLLQKSLDKIEGVIVDVPY 149
              L  ++++  + +     L  +  +    P 
Sbjct: 129 AAVLYHKMNNEKQAEDCITRLIHLNKIDPHAPN 161


>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid
           cleavage, retinal formation, oxidoreductase,
           dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB:
           2bix_A*
          Length = 490

 Score = 29.4 bits (65), Expect = 2.6
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 11/58 (18%)

Query: 301 VEGSDPSCL----LRATKNKVEIEGMQTAHIQDGVAMVY-FLF------WFYSQSLET 347
           VEGS P  L     R     +EI      H  DG  MV  F F       F S+ + T
Sbjct: 38  VEGSIPPDLQGTLYRNGPGLLEIGDRPLKHPFDGDGMVTAFKFPGDGRVHFQSKFVRT 95


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 28.6 bits (63), Expect = 3.7
 Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 68/179 (37%)

Query: 30  MDAFLVPRVDEYRGEFVDKGSERLAWLSGFTGSAGIAIVLRQKSVIFVDGRYTLQVEKEV 89
           M+AF         GEF  +G   +AW+ GF              + + +G          
Sbjct: 840 MEAF---------GEFSLEGCVEMAWIMGF--------------ISYHNG---------- 866

Query: 90  DTALFTIKNIAIEPLHAWISEHGFVGLRLGLDSR-LHSSFEVDLLQKSLDKIEGVIVDVP 148
                   N+   P   W+        +  +D + + + +E  +L+ S     G+ +  P
Sbjct: 867 --------NLKGRPYTGWVDSK----TKEPVDDKDVKAKYETSILEHS-----GIRLIEP 909

Query: 149 -----YNPIDSLWKDRPQRLYRKVAMQDMA--YAGRESQEKIR----DICKILHQKEVG 196
                YNP      ++ + +   +  +D+    A +E+ E+ +    D   I    E G
Sbjct: 910 ELFNGYNP------EKKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETG 962


>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric
           acid cycle, heat- like domain, lyase; HET: TRA; 2.40A
           {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
          Length = 865

 Score = 27.6 bits (61), Expect = 8.6
 Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 18/96 (18%)

Query: 159 RPQRLYRKVAMQDMAYAGRESQE--KIRDICKI--LHQKEVGAVFICD-----------P 203
           RP      +AM   A  G E  +   +  I +I  L QK     ++ D            
Sbjct: 191 RPDIPLHALAMLKNAREGIEPDQPGVVGPIKQIEALQQKGFPLAYVGDVVGTGSSRKSAT 250

Query: 204 SSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEIFF 239
           +S+ W     G DIP  P      +      A IFF
Sbjct: 251 NSVLWFM---GDDIPHVPNKRGGGLCLGGKIAPIFF 283


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 5,380,753
Number of extensions: 256949
Number of successful extensions: 684
Number of sequences better than 10.0: 1
Number of HSP's gapped: 616
Number of HSP's successfully gapped: 42
Length of query: 609
Length of database: 5,693,230
Length adjustment: 98
Effective length of query: 511
Effective length of database: 3,317,318
Effective search space: 1695149498
Effective search space used: 1695149498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.2 bits)