HHsearch alignment for GI: 254780606 and conserved domain: COG1158
>COG1158 Rho Transcription termination factor [Transcription].
Probab=94.59 E-value=0.041 Score=33.50 Aligned_cols=156 Identities=22% Similarity=0.300 Sum_probs=85.0
Q ss_pred ECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEE----CHHHH
Q ss_conf 1120----114846997078753447999999999985680110799972342100012577520000444----41787
Q gi|254780606|r 406 IADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVT----NPKKA 477 (744)
Q Consensus 406 ~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~----~~~~~ 477 (744)
T Consensus 163 viDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV~--geViaSTFDepp~~ 240 (422)
T COG1158 163 VIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSVK--GEVVASTFDEPPSR 240 (422)
T ss_pred HHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHC--CEEEEECCCCCHHH
T ss_conf 7665265678846568669878733899999999863799649999993478067777887524--06986448886054
Q ss_pred HHHHHHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 689999998667-6999999807786799999886420267766654323386799984456876753103589999999
Q gi|254780606|r 478 VMALKWAVREME-ERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRL 556 (744)
Q Consensus 478 ~~~l~~~~~em~-~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~l 556 (744)
T Consensus 241 Hv----qVAE~viEkAKRlVE-----------------------------------------------~~kDVVILLDSI 269 (422)
T COG1158 241 HV----QVAEMVIEKAKRLVE-----------------------------------------------HGKDVVILLDSI 269 (422)
T ss_pred HH----HHHHHHHHHHHHHHH-----------------------------------------------CCCCEEEEEHHH
T ss_conf 68----999999999998887-----------------------------------------------178689996567
Q ss_pred HHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEE-----EEECCCHHHCCHHCCCC----C-------HHHHCCCCCE
Q ss_conf 99642013589998516544441467885056305-----72036811100326763----1-------6885689846
Q gi|254780606|r 557 AQMARAAGIHLIMATQRPSVDVITGTIKANFPIRI-----SFQVTSKIDSRTILGEH----G-------AEQLLGRGDM 619 (744)
Q Consensus 557 a~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri-----~~~v~~~~dsr~il~~~----g-------ae~l~g~gd~ 619 (744)
T Consensus 270 TRLaRAYN~-----v~P~SGkvLsGGvD~nAL~~PKrFFGAARNIEeGGSLTIiATALVdTGSrMDeVIfEEFKGTGNm 343 (422)
T COG1158 270 TRLARAYNT-----VVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNM 343 (422)
T ss_pred HHHHHHHCC-----CCCCCCCEECCCCCHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCE
T ss_conf 789988536-----67997774048738566048355421220554586341111124414775112025342577750