HHsearch alignment for GI: 254780606 and conserved domain: COG1158

>COG1158 Rho Transcription termination factor [Transcription].
Probab=94.59  E-value=0.041  Score=33.50  Aligned_cols=156  Identities=22%  Similarity=0.300  Sum_probs=85.0

Q ss_pred             ECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEE----CHHHH
Q ss_conf             1120----114846997078753447999999999985680110799972342100012577520000444----41787
Q gi|254780606|r  406 IADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVT----NPKKA  477 (744)
Q Consensus       406 ~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~----~~~~~  477 (744)
T Consensus       163 viDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV~--geViaSTFDepp~~  240 (422)
T COG1158         163 VIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSVK--GEVVASTFDEPPSR  240 (422)
T ss_pred             HHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHC--CEEEEECCCCCHHH
T ss_conf             7665265678846568669878733899999999863799649999993478067777887524--06986448886054


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             689999998667-6999999807786799999886420267766654323386799984456876753103589999999
Q gi|254780606|r  478 VMALKWAVREME-ERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRL  556 (744)
Q Consensus       478 ~~~l~~~~~em~-~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~l  556 (744)
T Consensus       241 Hv----qVAE~viEkAKRlVE-----------------------------------------------~~kDVVILLDSI  269 (422)
T COG1158         241 HV----QVAEMVIEKAKRLVE-----------------------------------------------HGKDVVILLDSI  269 (422)
T ss_pred             HH----HHHHHHHHHHHHHHH-----------------------------------------------CCCCEEEEEHHH
T ss_conf             68----999999999998887-----------------------------------------------178689996567


Q ss_pred             HHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEE-----EEECCCHHHCCHHCCCC----C-------HHHHCCCCCE
Q ss_conf             99642013589998516544441467885056305-----72036811100326763----1-------6885689846
Q gi|254780606|r  557 AQMARAAGIHLIMATQRPSVDVITGTIKANFPIRI-----SFQVTSKIDSRTILGEH----G-------AEQLLGRGDM  619 (744)
Q Consensus       557 a~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri-----~~~v~~~~dsr~il~~~----g-------ae~l~g~gd~  619 (744)
T Consensus       270 TRLaRAYN~-----v~P~SGkvLsGGvD~nAL~~PKrFFGAARNIEeGGSLTIiATALVdTGSrMDeVIfEEFKGTGNm  343 (422)
T COG1158         270 TRLARAYNT-----VVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNM  343 (422)
T ss_pred             HHHHHHHCC-----CCCCCCCEECCCCCHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCE
T ss_conf             789988536-----67997774048738566048355421220554586341111124414775112025342577750