HHsearch alignment for GI: 254780606 and conserved domain: COG1198

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=95.54  E-value=0.066  Score=32.08  Aligned_cols=141  Identities=18%  Similarity=0.199  Sum_probs=66.5

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCE------ECCCCC-CCCEEEEEEECHHHHHHHHHHH
Q ss_conf             484699707875344799999999998568011079997234210------001257-7520000444417876899999
Q gi|254780606|r  412 MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLE------LSVYDG-IPHLLTPVVTNPKKAVMALKWA  484 (744)
Q Consensus       412 ~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~------~~~~~~-~ph~~~~v~~~~~~~~~~l~~~  484 (744)
T Consensus       217 ~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk--q-vLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~---er~~~W~  290 (730)
T COG1198         217 FAPFLLDGVTGSGKTEVYLEAIAKVLAQGK--Q-VLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPG---ERYRVWR  290 (730)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHHCCC--E-EEEEECCCCCHHHHHHHHHHHHCCCHHHHCCCCCHH---HHHHHHH
T ss_conf             665367677788589999999999997598--7-999956534569999999998678745314657927---8999999


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE-EEEEHHHHHHHHHHCCHHHHHHHHHHHH-HHHC
Q ss_conf             9866769999998077867999998864202677666543233867-9998445687675310358999999999-6420
Q gi|254780606|r  485 VREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPY-IVIIVDEMADLMMVAGKEIEGAIQRLAQ-MARA  562 (744)
Q Consensus       485 ~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~-ivvviDE~a~l~~~~~~~~e~~~~~la~-~~ra  562 (744)
T Consensus       291 ~~---------~~G~~~vVIG--------------tRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~  347 (730)
T COG1198         291 RA---------RRGEARVVIG--------------TRSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK  347 (730)
T ss_pred             HH---------HCCCCEEEEE--------------ECHHHCCCHHHCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             98---------5597159997--------------122330723125769970245643247777776789999999886


Q ss_pred             CEEEEEEEECCCCCCCCHH
Q ss_conf             1358999851654444146
Q gi|254780606|r  563 AGIHLIMATQRPSVDVITG  581 (744)
Q Consensus       563 ~GihlilatQrp~~~vi~~  581 (744)
T Consensus       348 ~~~pvvLgSATPSLES~~~  366 (730)
T COG1198         348 ENAPVVLGSATPSLESYAN  366 (730)
T ss_pred             CCCCEEEECCCCCHHHHHH
T ss_conf             0998898268877899986