HHsearch alignment for GI: 254780606 and conserved domain: COG1198
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=95.54 E-value=0.066 Score=32.08 Aligned_cols=141 Identities=18% Similarity=0.199 Sum_probs=66.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCE------ECCCCC-CCCEEEEEEECHHHHHHHHHHH
Q ss_conf 484699707875344799999999998568011079997234210------001257-7520000444417876899999
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLE------LSVYDG-IPHLLTPVVTNPKKAVMALKWA 484 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~------~~~~~~-~ph~~~~v~~~~~~~~~~l~~~ 484 (744)
T Consensus 217 ~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk--q-vLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~---er~~~W~ 290 (730)
T COG1198 217 FAPFLLDGVTGSGKTEVYLEAIAKVLAQGK--Q-VLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPG---ERYRVWR 290 (730)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCC--E-EEEEECCCCCHHHHHHHHHHHHCCCHHHHCCCCCHH---HHHHHHH
T ss_conf 665367677788589999999999997598--7-999956534569999999998678745314657927---8999999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE-EEEEHHHHHHHHHHCCHHHHHHHHHHHH-HHHC
Q ss_conf 9866769999998077867999998864202677666543233867-9998445687675310358999999999-6420
Q gi|254780606|r 485 VREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPY-IVIIVDEMADLMMVAGKEIEGAIQRLAQ-MARA 562 (744)
Q Consensus 485 ~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~-ivvviDE~a~l~~~~~~~~e~~~~~la~-~~ra 562 (744)
T Consensus 291 ~~---------~~G~~~vVIG--------------tRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~ 347 (730)
T COG1198 291 RA---------RRGEARVVIG--------------TRSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK 347 (730)
T ss_pred HH---------HCCCCEEEEE--------------ECHHHCCCHHHCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98---------5597159997--------------122330723125769970245643247777776789999999886
Q ss_pred CEEEEEEEECCCCCCCCHH
Q ss_conf 1358999851654444146
Q gi|254780606|r 563 AGIHLIMATQRPSVDVITG 581 (744)
Q Consensus 563 ~GihlilatQrp~~~vi~~ 581 (744)
T Consensus 348 ~~~pvvLgSATPSLES~~~ 366 (730)
T COG1198 348 ENAPVVLGSATPSLESYAN 366 (730)
T ss_pred CCCCEEEECCCCCHHHHHH
T ss_conf 0998898268877899986