HHsearch alignment for GI: 254780606 and conserved domain: COG2805
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=97.67 E-value=9.9e-05 Score=51.44 Aligned_cols=184 Identities=28% Similarity=0.385 Sum_probs=87.1
Q ss_pred EEECCHHHCC--CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHH-
Q ss_conf 3211201148--4699707875344799999999998568011079997234210001257752000044441787689-
Q gi|254780606|r 404 SVIADLANMP--HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMA- 480 (744)
Q Consensus 404 ~~~~dl~~~P--H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~- 480 (744)
T Consensus 115 ~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~i---N~~~~~HIlT---------------------IEDPIE~vh~s 170 (353)
T COG2805 115 PIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYI---NKHKAKHILT---------------------IEDPIEYVHES 170 (353)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH---HCCCCCCEEE---------------------ECCCHHHHHCC
T ss_conf 79999982879669986799996787999999998---4147751687---------------------23746865043
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 99999866769999998077867999998864202677666543233867999844568767531035899999999964
Q gi|254780606|r 481 LKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMA 560 (744)
Q Consensus 481 l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ 560 (744)
T Consensus 171 kksl---I~Q-----REvG~dT~sF~~aLraALReD------------P-DVIlvGEmRD~--------ET-i-~~ALtA 219 (353)
T COG2805 171 KKSL---INQ-----REVGRDTLSFANALRAALRED------------P-DVILVGEMRDL--------ET-I-RLALTA 219 (353)
T ss_pred HHHH---HHH-----HHHCCCHHHHHHHHHHHHHCC------------C-CEEEEECCCCH--------HH-H-HHHHHH
T ss_conf 2766---668-----774542788999999986029------------9-97998213469--------99-9-999989
Q ss_pred HCCEEEEEEEECCCC--CCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCC-CCCEEEE-CCCCCEEEEEECCC
Q ss_conf 201358999851654--4441467885056305720368111003267631688568-9846864-68984389993438
Q gi|254780606|r 561 RAAGIHLIMATQRPS--VDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLG-RGDMLYM-SGGGRIQRVHGPLV 636 (744)
Q Consensus 561 ra~GihlilatQrp~--~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g-~gd~l~~-~~~~~~~r~~~~~~ 636 (744)
T Consensus 220 AETG-HLV~~TLHT~sA~~ti~R-iidvFp~------~ek~~vR----~~La~sL~aVisQ~L~~~~~g~GRv~~~EIli 287 (353)
T COG2805 220 AETG-HLVFGTLHTNSAAKTIDR-IIDVFPA------EEKDQVR----SQLAESLRAVISQRLLPKKDGGGRVAAFEILI 287 (353)
T ss_pred HHCC-CEEEEECCCCCHHHHHHH-HHHHCCH------HHHHHHH----HHHHHHHHHHHHHHCEECCCCCCEEEEEHHHH
T ss_conf 8608-877774023637777779-8873886------3467999----99999999997633100368996146415774
Q ss_pred CHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9889999999998408875311
Q gi|254780606|r 637 SDIEIEKVVQHLKKQGCPEYLN 658 (744)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~ 658 (744)
T Consensus 288 ~TpAv---rnlIr-e~K~~qi~ 305 (353)
T COG2805 288 NTPAV---RNLIR-EGKTHQIP 305 (353)
T ss_pred CCHHH---HHHHH-CCCHHHHH
T ss_conf 78889---99984-48588899