HHsearch alignment for GI: 254780606 and conserved domain: COG3840
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism].
Probab=96.12 E-value=0.0098 Score=37.76 Aligned_cols=176 Identities=18% Similarity=0.257 Sum_probs=85.5
Q ss_pred CCEEECCHHH--CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCC-----------CCCEEE
Q ss_conf 8732112011--484699707875344799999999998568011079997234210001257-----------752000
Q gi|254780606|r 402 GESVIADLAN--MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDG-----------IPHLLT 468 (744)
Q Consensus 402 g~~~~~dl~~--~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~-----------~ph~~~ 468 (744)
T Consensus 13 ~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLn-LIAGF~---~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLt- 87 (231)
T COG3840 13 HLPMRFDLTVPAGEIVAILGPSGAGKSTLLN-LIAGFE---TPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLT- 87 (231)
T ss_pred CCEEEEEEEECCCCEEEEECCCCCCHHHHHH-HHHHCC---CCCCCEEEECCEECCCCCCCCCCHHHHHHCCCCCHHHH-
T ss_conf 5007888760678579997788865788999-987424---77874589857214768954487311110056421102-
Q ss_pred EEEECHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCCCEEEEEHHH-HHHHH
Q ss_conf 0444417876-89999998667699999980778679999988642026776665----432338679998445-68767
Q gi|254780606|r 469 PVVTNPKKAV-MALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCG----DDMRPMPYIVIIVDE-MADLM 542 (744)
Q Consensus 469 ~v~~~~~~~~-~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~----~~~~~~p~ivvviDE-~a~l~ 542 (744)
T Consensus 88 -V~qNigLGl~P~LkL~a~~r~~v~~aa~~v---Gl~~~~~RLP~~LSGGqRQRvALARclvR~~P--ilLLDEPFsAL- 160 (231)
T COG3840 88 -VAQNIGLGLSPGLKLNAEQREKVEAAAAQV---GLAGFLKRLPGELSGGQRQRVALARCLVREQP--ILLLDEPFSAL- 160 (231)
T ss_pred -HHHHHCCCCCCCCCCCHHHHHHHHHHHHHH---CHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC--EEEECCCHHHC-
T ss_conf -655324567866524888999999999985---75557540962247407789999998802687--57754811331-
Q ss_pred HHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCH
Q ss_conf 53103589999999996420135899985165444414678850563057203681
Q gi|254780606|r 543 MVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSK 598 (744)
Q Consensus 543 ~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~ 598 (744)
T Consensus 161 --dP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~------~ia~~~~~l~~Gr 207 (231)
T COG3840 161 --DPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAA------RIADRVVFLDNGR 207 (231)
T ss_pred --CHHHHHHHHHHHHHHHHHHCCEEEEEECCHH-HHH------HHHHCEEEEECCE
T ss_conf --9788999999999998842877999957888-999------7652069985777