HHsearch alignment for GI: 254780606 and conserved domain: PRK05707
>PRK05707 DNA polymerase III subunit delta'; Validated.
Probab=94.65 E-value=0.36 Score=27.05 Aligned_cols=155 Identities=16% Similarity=0.203 Sum_probs=79.0
Q ss_pred HHHCCC-EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC--EECCCCCCCCEEEEEEECHHHHHHHHHHHH
Q ss_conf 011484-69970787534479999999999856801107999723421--000125775200004444178768999999
Q gi|254780606|r 409 LANMPH-ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML--ELSVYDGIPHLLTPVVTNPKKAVMALKWAV 485 (744)
Q Consensus 409 l~~~PH-~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~--~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~ 485 (744)
T Consensus 18 ~~rl~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~-~~~~-----~~Cg~C~sC~~~~~~~HPD~~~i~-pe~~~~~I---- 86 (328)
T PRK05707 18 RGRHAHAYLLHGPAGIGKRALAERLAAFLLCEA-PQGG-----GACGSCKGCQLLAAGSHPDNFVLE-PEEADKPI---- 86 (328)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCC-CCCC-----CCCCCCHHHHHHHCCCCCCEEEEE-CCCCCCCC----
T ss_conf 798220464479998679999999999984899-9998-----999888899998758999879984-26667769----
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEE
Q ss_conf 86676999999807786799999886420267766654323386799984456876753103589999999996420135
Q gi|254780606|r 486 REMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGI 565 (744)
Q Consensus 486 ~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gi 565 (744)
T Consensus 87 -------------~IdqIR~l~~~~~~~---~~~--------g~~KV~iI~~A-e~m~~~A---aNALLKtLE-EPp~~t 137 (328)
T PRK05707 87 -------------KVDQVRELVSFVVQT---AQL--------GGRKVVLIEPA-EAMNRNA---ANALLKSLE-EPSGQT 137 (328)
T ss_pred -------------CHHHHHHHHHHHHHC---CCC--------CCCEEEEEEHH-HHHCHHH---HHHHHHHHH-CCCCCE
T ss_conf -------------799999999998317---667--------89579995028-7738999---999999850-789875
Q ss_pred EEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCC
Q ss_conf 89998516544441467885056305720368111003267
Q gi|254780606|r 566 HLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILG 606 (744)
Q Consensus 566 hlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~ 606 (744)
T Consensus 138 ~fiL~t~~~~-~lLpT-I~SRCq-~~~~~~p~~e~~~~~L~ 175 (328)
T PRK05707 138 VLLLISHQPS-RLLPT-IKSRCQ-QLACPLPSNEPSLQWLQ 175 (328)
T ss_pred EEEEEECCHH-HCHHH-HHHCCE-EEECCCCCHHHHHHHHH
T ss_conf 9998609934-48258-874141-33489989999999999