HHsearch alignment for GI: 254780606 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=95.21 E-value=0.13 Score=30.15 Aligned_cols=145 Identities=17% Similarity=0.269 Sum_probs=83.5
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC---E-ECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHH
Q ss_conf 9970787534479999999999856801107999723421---0-00125775200004444178768999999866769
Q gi|254780606|r 416 LVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML---E-LSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEER 491 (744)
Q Consensus 416 lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~---~-~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r 491 (744)
T Consensus 180 alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~----~l~~- 254 (404)
T PRK06995 180 ALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALA----ELRN- 254 (404)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH----HHCC-
T ss_conf 98668887637589999999999838983799976875478999999999875955999599999999999----7089-
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEE
Q ss_conf 99999807786799999886420267766654323386799984456876753103589999999996420135899985
Q gi|254780606|r 492 YRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMAT 571 (744)
Q Consensus 492 ~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihlilat 571 (744)
T Consensus 255 --------------------------------------~dlILIDTaG-r-s~rD~~~~e~l~~l~~~~~~~~~~LVLsa 294 (404)
T PRK06995 255 --------------------------------------KHIVLIDTVG-M-SQRDRMVSEQIAMLHGAGAPVQRLLLLNA 294 (404)
T ss_pred --------------------------------------CCEEEEECCC-C-CCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf --------------------------------------9999980999-8-97688899999999735788528999779
Q ss_pred CCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCC
Q ss_conf 16544441467885056305720368111003267
Q gi|254780606|r 572 QRPSVDVITGTIKANFPIRISFQVTSKIDSRTILG 606 (744)
Q Consensus 572 Qrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~ 606 (744)
T Consensus 295 t~~~~-dl~~i~~~f~~~~~~~~I~TKLDEt~~~G 328 (404)
T PRK06995 295 TSHGD-TLNEVVQAYRGPGLAGCILTKLDEAASLG 328 (404)
T ss_pred CCCHH-HHHHHHHHHCCCCCCEEEEECCCCCCCHH
T ss_conf 89999-99999998446999839983040679723