HHsearch alignment for GI: 254780606 and conserved domain: PRK08840
>PRK08840 replicative DNA helicase; Provisional.
Probab=96.06 E-value=0.039 Score=33.61 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=71.7
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECC-------CCCCC--CEEEEEEECHHH--H
Q ss_conf 011484699707875344799999999998568011079997234210001-------25775--200004444178--7
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSV-------YDGIP--HLLTPVVTNPKK--A 477 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~-------~~~~p--h~~~~v~~~~~~--~ 477 (744)
T Consensus 214 l~~G~LiviaaRPsmGKTalalnia~n~a~~~~---~~v~~fSlEMs~~ql~~Rlls~~s~i~~~~ir~g~l~~~e~~~i 290 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMNLCENAAMDQD---KPVLIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARI 290 (464)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC---CCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHH
T ss_conf 875767999837987368999999999999659---96799767799899999999985389820111488899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC------HHHHH
Q ss_conf 689999998667699999980778679999988642026776665432338679998445687675310------35899
Q gi|254780606|r 478 VMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG------KEIEG 551 (744)
Q Consensus 478 ~~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~------~~~e~ 551 (744)
T Consensus 291 ~~a~~~~---~~~~~l~idd~~~~t~~~i~a~~r~~~~~~--------~~l--~lvvIDYLq-L~~~~~~~~~r~~~i~~ 356 (464)
T PRK08840 291 SSTMGIL---MEKKNMYIDDSSGLTPTEVRSRARRVAREH--------GGL--SMIMVDYLQ-LMRVPALQDNRTLEIAE 356 (464)
T ss_pred HHHHHHH---HHCCCEEEECCCCCCHHHHHHHHHHHHHHC--------CCC--CEEEEEHHH-HCCCCCCCCHHHHHHHH
T ss_conf 9999999---847995885699875799999999999864--------898--789961886-60678864036789999
Q ss_pred HHHHHHHHHHCCEEEEEEEEC
Q ss_conf 999999964201358999851
Q gi|254780606|r 552 AIQRLAQMARAAGIHLIMATQ 572 (744)
Q Consensus 552 ~~~~la~~~ra~GihlilatQ 572 (744)
T Consensus 357 isr~lK~lAkel~vpVv~lsQ 377 (464)
T PRK08840 357 ISRSLKALAKELNVPVVALSQ 377 (464)
T ss_pred HHHHHHHHHHHHCCCEEEECC
T ss_conf 999999999996998999631