HHsearch alignment for GI: 254780606 and conserved domain: PRK09452
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed.
Probab=96.07 E-value=0.063 Score=32.23 Aligned_cols=162 Identities=20% Similarity=0.317 Sum_probs=78.8
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC------------CEECCCCCCCCEEEEEEE
Q ss_conf 21120114846997078753447999999999985680110799972342------------100012577520000444
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM------------LELSVYDGIPHLLTPVVT 472 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~------------~~~~~~~~~ph~~~~v~~ 472 (744)
T Consensus 36 vsl~I~~GE~~~llGpSGsGKSTLlr~-iaGl~---~p~sG~I~~-~G~~v~~~~~~~R~ig~VfQ~~aLfp~lT--V~e 108 (378)
T PRK09452 36 LDLTINNGEFLTLLGPSGCGKTTVLRL-IAGFE---TPDSGRIML-DGQDITHVPAENRYVNTVFQSYALFPHMT--VFE 108 (378)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEE-CCEECCCCCHHHCCEEEEECCCCCCCCCC--HHH
T ss_conf 277999998999998999769999999-97699---998469999-99998989978988589922764378986--999
Q ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHH---------HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHH-HHH
Q ss_conf 4178768999999866769-9999980778679---------9999886420267766654323386799984456-876
Q gi|254780606|r 473 NPKKAVMALKWAVREMEER-YRKMSHLSVRNIK---------SYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEM-ADL 541 (744)
Q Consensus 473 ~~~~~~~~l~~~~~em~~r-~~~~~~~~~~~i~---------~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~-a~l 541 (744)
T Consensus 109 Nv~~~l~~~~~~~~e~~~rv~e~L~~v~L~~~~~r~p~~LSGGqqQRVaiARAL---------~~~P~-vLLLDEPts~L 178 (378)
T PRK09452 109 NVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV---------VNKPK-VLLLDESLSAL 178 (378)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHH---------CCCCC-EEEECCCCCCC
T ss_conf 999899765998799999999998750734354368354998899999999986---------23998-99957864447
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEE
Q ss_conf 7531035899999999964201358999851654444146788505630572
Q gi|254780606|r 542 MMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISF 593 (744)
Q Consensus 542 ~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~ 593 (744)
T Consensus 179 ---D~~~r~~~~~~l~~l~~~~g~T~i~VTHD~~-eA~------~laDrI~V 220 (378)
T PRK09452 179 ---DYKLRKQMQNELKALQRKLGITFVFVTHDQE-EAL------TMSDRIVV 220 (378)
T ss_pred ---CHHHHHHHHHHHHHHHHHHCCEEEEECCCHH-HHH------HHCCEEEE
T ss_conf ---9999999999999999984998999988999-999------86998999