HHsearch alignment for GI: 254780606 and conserved domain: PRK10875
>PRK10875 recD exonuclease V subunit alpha; Provisional.
Probab=96.34 E-value=0.068 Score=31.98 Aligned_cols=134 Identities=16% Similarity=0.212 Sum_probs=64.9
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 14846997078753447999999999985680110799972342100012577520000444417876899999986676
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEE 490 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~ 490 (744)
T Consensus 161 ~~~~~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~LaA---------------------PTGKAAaRL~Esi~~~~~ 219 (607)
T PRK10875 161 TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAA---------------------PTGKAAARLTESLGKALR 219 (607)
T ss_pred HCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEC---------------------CHHHHHHHHHHHHHHHHH
T ss_conf 55778996799987788999999999996458997089988---------------------228999999999987875
Q ss_pred HHHHH----HH--CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCE
Q ss_conf 99999----98--0778679999988642026776665432338679998445687675310358999999999642013
Q gi|254780606|r 491 RYRKM----SH--LSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAG 564 (744)
Q Consensus 491 r~~~~----~~--~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~G 564 (744)
T Consensus 220 ~l~~~~~~~~~~p~~a~TiHRL----Lg~~p~~~~f~~~~~nPL~~DvlIVDEASM--VDl-~----Lm~~LL~-Alp~~ 287 (607)
T PRK10875 220 QLPLTDEQKKRIPEDASTLHRL----LGAQPGSQRLRYHAGNPLHLDVLVVDEASM--IDL-P----MMSRLID-ALPDH 287 (607)
T ss_pred HCCCCHHHHHCCCCCCEEHHHH----CCCCCCCCCCCCCCCCCCCCCEEEEECCHH--HHH-H----HHHHHHH-HCCCC
T ss_conf 3476656663376556658975----296789876565779999889899907336--659-9----9999998-28999
Q ss_pred EEEEEE---ECCCCCC
Q ss_conf 589998---5165444
Q gi|254780606|r 565 IHLIMA---TQRPSVD 577 (744)
Q Consensus 565 ihlila---tQrp~~~ 577 (744)
T Consensus 288 aRLILvGD~dQLpSVg 303 (607)
T PRK10875 288 ARVIFLGDRDQLASVE 303 (607)
T ss_pred CEEEEECCHHHCCCCC
T ss_conf 8899965623247888