HHsearch alignment for GI: 254780606 and conserved domain: PRK10875

>PRK10875 recD exonuclease V subunit alpha; Provisional.
Probab=96.34  E-value=0.068  Score=31.98  Aligned_cols=134  Identities=16%  Similarity=0.212  Sum_probs=64.9

Q ss_pred             HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf             14846997078753447999999999985680110799972342100012577520000444417876899999986676
Q gi|254780606|r  411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEE  490 (744)
Q Consensus       411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~  490 (744)
T Consensus       161 ~~~~~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~LaA---------------------PTGKAAaRL~Esi~~~~~  219 (607)
T PRK10875        161 TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAA---------------------PTGKAAARLTESLGKALR  219 (607)
T ss_pred             HCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEC---------------------CHHHHHHHHHHHHHHHHH
T ss_conf             55778996799987788999999999996458997089988---------------------228999999999987875


Q ss_pred             HHHHH----HH--CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCE
Q ss_conf             99999----98--0778679999988642026776665432338679998445687675310358999999999642013
Q gi|254780606|r  491 RYRKM----SH--LSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAG  564 (744)
Q Consensus       491 r~~~~----~~--~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~G  564 (744)
T Consensus       220 ~l~~~~~~~~~~p~~a~TiHRL----Lg~~p~~~~f~~~~~nPL~~DvlIVDEASM--VDl-~----Lm~~LL~-Alp~~  287 (607)
T PRK10875        220 QLPLTDEQKKRIPEDASTLHRL----LGAQPGSQRLRYHAGNPLHLDVLVVDEASM--IDL-P----MMSRLID-ALPDH  287 (607)
T ss_pred             HCCCCHHHHHCCCCCCEEHHHH----CCCCCCCCCCCCCCCCCCCCCEEEEECCHH--HHH-H----HHHHHHH-HCCCC
T ss_conf             3476656663376556658975----296789876565779999889899907336--659-9----9999998-28999


Q ss_pred             EEEEEE---ECCCCCC
Q ss_conf             589998---5165444
Q gi|254780606|r  565 IHLIMA---TQRPSVD  577 (744)
Q Consensus       565 ihlila---tQrp~~~  577 (744)
T Consensus       288 aRLILvGD~dQLpSVg  303 (607)
T PRK10875        288 ARVIFLGDRDQLASVE  303 (607)
T ss_pred             CEEEEECCHHHCCCCC
T ss_conf             8899965623247888