HHsearch alignment for GI: 254780606 and conserved domain: PRK11607
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional.
Probab=94.70 E-value=0.11 Score=30.63 Aligned_cols=187 Identities=17% Similarity=0.295 Sum_probs=84.6
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE--ECCC---------CCEECCCCCCCCEEEEEEEC
Q ss_conf 211201148469970787534479999999999856801107999--7234---------21000125775200004444
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM--VDPK---------MLELSVYDGIPHLLTPVVTN 473 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l--iD~k---------~~~~~~~~~~ph~~~~v~~~ 473 (744)
T Consensus 38 vsl~I~~GE~~~llGpsGsGKSTllr-~i~Gl~---~p~~G~I~i~G~di~~~~~~~r~ig~vfQ~~~L~p~lt--V~eN 111 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLR-MLAGFE---QPSAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMT--VEQN 111 (377)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHH-HHHCCC---CCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCC--HHHH
T ss_conf 18799999899999999848999999-997699---99865999999998879866665046701265587757--5452
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHCCCCCHHHHHH------------HHHHHHCCCCCCCCCCCCCCCEEEEEHHHH-H
Q ss_conf 17876899999986676999-999807786799999------------886420267766654323386799984456-8
Q gi|254780606|r 474 PKKAVMALKWAVREMEERYR-KMSHLSVRNIKSYNE------------RISTMYGEKPQGCGDDMRPMPYIVIIVDEM-A 539 (744)
Q Consensus 474 ~~~~~~~l~~~~~em~~r~~-~~~~~~~~~i~~~n~------------~~~~~~~~~~~~~~~~~~~~p~ivvviDE~-a 539 (744)
T Consensus 112 i~~~l~~~~~~~~e~~~rv~e~l~~v~---L~~~~~~~p~~LSGGqrQRVaiArA---------L~~~P~l-LllDEPts 178 (377)
T PRK11607 112 IAFGLKQDKLPKAEIASRVNEMLGLVH---MQEFAKRKPHQLSGGQRQRVALARS---------LAKRPKL-LLLDEPMG 178 (377)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCC---CHHHHHCCHHHCCHHHHHHHHHHHH---------HHCCCCE-EEECCCCC
T ss_conf 454786659998999999999985446---2766658965789868789999998---------7449978-99648754
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEE----CCCHHHCCHHCCCCCH---HH
Q ss_conf 7675310358999999999642013589998516544441467885056305720----3681110032676316---88
Q gi|254780606|r 540 DLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQ----VTSKIDSRTILGEHGA---EQ 612 (744)
Q Consensus 540 ~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~----v~~~~dsr~il~~~ga---e~ 612 (744)
T Consensus 179 ~LD---~~~r~~l~~~l~~l~~~~g~Tii~VTHD~~-eA~------~laDrI~Vm~~G~Ivq~GtP~Eiy~~P~~~fva~ 248 (377)
T PRK11607 179 ALD---KKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAM------TMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAE 248 (377)
T ss_pred CCC---HHHHHHHHHHHHHHHHHHCCEEEEECCCHH-HHH------HHCCEEEEEECCEEEEEECHHHHHHCCCCHHHHH
T ss_conf 479---999999999999999973999999998999-999------8699999998999999968899986899858987
Q ss_pred HCCCCCEE
Q ss_conf 56898468
Q gi|254780606|r 613 LLGRGDML 620 (744)
Q Consensus 613 l~g~gd~l 620 (744)
T Consensus 249 f~G~~N~l 256 (377)
T PRK11607 249 FIGSVNVF 256 (377)
T ss_pred HCCCCCEE
T ss_conf 27935057