HHsearch alignment for GI: 254780606 and conserved domain: PRK12678
>PRK12678 transcription termination factor Rho; Provisional.
Probab=90.33 E-value=1.3 Score=23.11 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=41.8
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCC
Q ss_conf 01148469970787534479999999999856801107999723421000125
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYD 461 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~ 461 (744)
T Consensus 408 iGkGQRgLIVapPkaGKT~ll~~ia~ai~~N~pe~~l~vlLiDERPEEVTdm~ 460 (667)
T PRK12678 408 IGKGQRGLIVSPPKAGKTTILQDIANAITTNNPECHLMVVLVDERPEEVTDMQ 460 (667)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
T ss_conf 67884546757997872599999999998569972899997378851566766