HHsearch alignment for GI: 254780606 and conserved domain: PRK12727
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=94.74 E-value=0.3 Score=27.52 Aligned_cols=191 Identities=14% Similarity=0.231 Sum_probs=109.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC----EECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf 469970787534479999999999856801107999723421----0001257752000044441787689999998667
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML----ELSVYDGIPHLLTPVVTNPKKAVMALKWAVREME 489 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~----~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~ 489 (744)
T Consensus 350 v~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~----l~ 425 (557)
T PRK12727 350 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER----LR 425 (557)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHH----HC
T ss_conf 47874377767311799999999997399818999726640879999999999839757982899999999998----36
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 69999998077867999998864202677666543233867999844568767531035899999999964201358999
Q gi|254780606|r 490 ERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIM 569 (744)
Q Consensus 490 ~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihlil 569 (744)
T Consensus 426 ~---------------------------------------~~lvliDTaG--~~~rd~~~~~~~~~l~-~~~~~~~~Lvl 463 (557)
T PRK12727 426 D---------------------------------------YKLVLIDTAG--MGQRDRALAAQLNWLR-AARQVTSLLVL 463 (557)
T ss_pred C---------------------------------------CCEEEEECCC--CCCCCHHHHHHHHHHH-CCCCCCEEEEE
T ss_conf 9---------------------------------------9989994999--8846999999999875-14776359999
Q ss_pred EECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCEEEECCCCC-E---EEEEECCCCHHHHHHHH
Q ss_conf 8516544441467885056305720368111003267631688568984686468984-3---89993438988999999
Q gi|254780606|r 570 ATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDMLYMSGGGR-I---QRVHGPLVSDIEIEKVV 645 (744)
Q Consensus 570 atQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~l~~~~~~~-~---~r~~~~~~~~~~~~~~~ 645 (744)
T Consensus 464 ~a~~~~-~~l~~~~~~~~~~~~~~~i~TKlDE~~~~G~~l~~~~~~~lp~~y~t~GQ~VPeDi~~a~~~~L----v~Ra~ 538 (557)
T PRK12727 464 PANAHF-SDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASL----VLRLE 538 (557)
T ss_pred ECCCCH-HHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHCCHHHH----HHHHH
T ss_conf 688998-9999999985379987489961436787039999999968982897589828523643899999----99999
Q ss_pred HHHHHCCCCC
Q ss_conf 9998408875
Q gi|254780606|r 646 QHLKKQGCPE 655 (744)
Q Consensus 646 ~~~~~~~~~~ 655 (744)
T Consensus 539 ~L~~~~~~~~ 548 (557)
T PRK12727 539 DLRRAADKPC 548 (557)
T ss_pred HHHHHCCCCC
T ss_conf 9764115899