HHsearch alignment for GI: 254780606 and conserved domain: PRK12727

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=94.74  E-value=0.3  Score=27.52  Aligned_cols=191  Identities=14%  Similarity=0.231  Sum_probs=109.9

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC----EECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf             469970787534479999999999856801107999723421----0001257752000044441787689999998667
Q gi|254780606|r  414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML----ELSVYDGIPHLLTPVVTNPKKAVMALKWAVREME  489 (744)
Q Consensus       414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~----~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~  489 (744)
T Consensus       350 v~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~----l~  425 (557)
T PRK12727        350 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER----LR  425 (557)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHH----HC
T ss_conf             47874377767311799999999997399818999726640879999999999839757982899999999998----36


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf             69999998077867999998864202677666543233867999844568767531035899999999964201358999
Q gi|254780606|r  490 ERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIM  569 (744)
Q Consensus       490 ~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihlil  569 (744)
T Consensus       426 ~---------------------------------------~~lvliDTaG--~~~rd~~~~~~~~~l~-~~~~~~~~Lvl  463 (557)
T PRK12727        426 D---------------------------------------YKLVLIDTAG--MGQRDRALAAQLNWLR-AARQVTSLLVL  463 (557)
T ss_pred             C---------------------------------------CCEEEEECCC--CCCCCHHHHHHHHHHH-CCCCCCEEEEE
T ss_conf             9---------------------------------------9989994999--8846999999999875-14776359999


Q ss_pred             EECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCEEEECCCCC-E---EEEEECCCCHHHHHHHH
Q ss_conf             8516544441467885056305720368111003267631688568984686468984-3---89993438988999999
Q gi|254780606|r  570 ATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDMLYMSGGGR-I---QRVHGPLVSDIEIEKVV  645 (744)
Q Consensus       570 atQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~l~~~~~~~-~---~r~~~~~~~~~~~~~~~  645 (744)
T Consensus       464 ~a~~~~-~~l~~~~~~~~~~~~~~~i~TKlDE~~~~G~~l~~~~~~~lp~~y~t~GQ~VPeDi~~a~~~~L----v~Ra~  538 (557)
T PRK12727        464 PANAHF-SDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASL----VLRLE  538 (557)
T ss_pred             ECCCCH-HHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHCCHHHH----HHHHH
T ss_conf             688998-9999999985379987489961436787039999999968982897589828523643899999----99999


Q ss_pred             HHHHHCCCCC
Q ss_conf             9998408875
Q gi|254780606|r  646 QHLKKQGCPE  655 (744)
Q Consensus       646 ~~~~~~~~~~  655 (744)
T Consensus       539 ~L~~~~~~~~  548 (557)
T PRK12727        539 DLRRAADKPC  548 (557)
T ss_pred             HHHHHCCCCC
T ss_conf             9764115899