HHsearch alignment for GI: 254780606 and conserved domain: PRK13342

>PRK13342 recombination factor protein RarA; Reviewed.
Probab=94.88  E-value=0.31  Score=27.45  Aligned_cols=68  Identities=21%  Similarity=0.253  Sum_probs=35.3

Q ss_pred             EEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEE-CCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCC
Q ss_conf             799984456876753103589999999996420135899985-16544441467885056305720368111003267
Q gi|254780606|r  530 YIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMAT-QRPSVDVITGTIKANFPIRISFQVTSKIDSRTILG  606 (744)
Q Consensus       530 ~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihlilat-Qrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~  606 (744)
T Consensus        93 ~tilfiDEIHRfnK----~QQD~LLp~vE~g~---iiLIgATTENP~f~in~a-LlSRc-~vf~l~~L~~~di~~iL~  161 (417)
T PRK13342         93 RTILFIDEIHRFNK----AQQDALLPHVEDGT---ITLIGATTENPSFEVNPA-LLSRA-QVFELKPLSEEDLEQLLK  161 (417)
T ss_pred             CEEEEEECHHHCCH----HHHHHHHHHHHCCC---EEEEEECCCCCHHHCCHH-HHHHH-HHEECCCCCHHHHHHHHH
T ss_conf             65999978200588----99999987511265---699974157922534898-98565-700205899999999999