HHsearch alignment for GI: 254780606 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=94.88 E-value=0.31 Score=27.45 Aligned_cols=68 Identities=21% Similarity=0.253 Sum_probs=35.3
Q ss_pred EEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEE-CCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCC
Q ss_conf 799984456876753103589999999996420135899985-16544441467885056305720368111003267
Q gi|254780606|r 530 YIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMAT-QRPSVDVITGTIKANFPIRISFQVTSKIDSRTILG 606 (744)
Q Consensus 530 ~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihlilat-Qrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~ 606 (744)
T Consensus 93 ~tilfiDEIHRfnK----~QQD~LLp~vE~g~---iiLIgATTENP~f~in~a-LlSRc-~vf~l~~L~~~di~~iL~ 161 (417)
T PRK13342 93 RTILFIDEIHRFNK----AQQDALLPHVEDGT---ITLIGATTENPSFEVNPA-LLSRA-QVFELKPLSEEDLEQLLK 161 (417)
T ss_pred CEEEEEECHHHCCH----HHHHHHHHHHHCCC---EEEEEECCCCCHHHCCHH-HHHHH-HHEECCCCCHHHHHHHHH
T ss_conf 65999978200588----99999987511265---699974157922534898-98565-700205899999999999