HHsearch alignment for GI: 254780606 and conserved domain: PRK13700

>PRK13700 conjugal transfer protein TraD; Provisional.
Probab=97.84  E-value=2.1e-05  Score=56.09  Aligned_cols=71  Identities=15%  Similarity=0.119  Sum_probs=53.9

Q ss_pred             CCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCC-CC-----CHHHHHHCCCCEEEEECCCHHHC
Q ss_conf             8679998445687675310358999999999642013589998516544-44-----14678850563057203681110
Q gi|254780606|r  528 MPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSV-DV-----ITGTIKANFPIRISFQVTSKIDS  601 (744)
Q Consensus       528 ~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~-~v-----i~~~ik~n~~~ri~~~v~~~~ds  601 (744)
T Consensus       417 ~RRiWfiiDELpSL~K-----L-p~L~~~Lae~RKfGGc~VlG~Qs~aQL~~iYG~~~A~ti~dl~nTkl~fR~~d~~tA  490 (732)
T PRK13700        417 NRRVWFFCDELPTLHK-----L-PDLVEILPEARKFGGCYVFGIQSYAQLEDIYGEKAAATLFDVMNTRAFFRSPSHKIA  490 (732)
T ss_pred             CCCEEEEEECCCCCCC-----C-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHH
T ss_conf             8615999754434334-----0-237899987520377589960649999998778789999986416689867987899


Q ss_pred             CHH
Q ss_conf             032
Q gi|254780606|r  602 RTI  604 (744)
Q Consensus       602 r~i  604 (744)
T Consensus       491 ~~~  493 (732)
T PRK13700        491 EFA  493 (732)
T ss_pred             HHH
T ss_conf             999