HHsearch alignment for GI: 254780606 and conserved domain: PRK13700
>PRK13700 conjugal transfer protein TraD; Provisional.
Probab=97.84 E-value=2.1e-05 Score=56.09 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=53.9
Q ss_pred CCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCC-CC-----CHHHHHHCCCCEEEEECCCHHHC
Q ss_conf 8679998445687675310358999999999642013589998516544-44-----14678850563057203681110
Q gi|254780606|r 528 MPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSV-DV-----ITGTIKANFPIRISFQVTSKIDS 601 (744)
Q Consensus 528 ~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~-~v-----i~~~ik~n~~~ri~~~v~~~~ds 601 (744)
T Consensus 417 ~RRiWfiiDELpSL~K-----L-p~L~~~Lae~RKfGGc~VlG~Qs~aQL~~iYG~~~A~ti~dl~nTkl~fR~~d~~tA 490 (732)
T PRK13700 417 NRRVWFFCDELPTLHK-----L-PDLVEILPEARKFGGCYVFGIQSYAQLEDIYGEKAAATLFDVMNTRAFFRSPSHKIA 490 (732)
T ss_pred CCCEEEEEECCCCCCC-----C-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHH
T ss_conf 8615999754434334-----0-237899987520377589960649999998778789999986416689867987899
Q ss_pred CHH
Q ss_conf 032
Q gi|254780606|r 602 RTI 604 (744)
Q Consensus 602 r~i 604 (744)
T Consensus 491 ~~~ 493 (732)
T PRK13700 491 EFA 493 (732)
T ss_pred HHH
T ss_conf 999