HHsearch alignment for GI: 254780606 and conserved domain: PRK13850

>PRK13850 type IV secretion system protein VirD4; Provisional.
Probab=91.44  E-value=0.96  Score=24.10  Aligned_cols=112  Identities=16%  Similarity=0.176  Sum_probs=73.1

Q ss_pred             EEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCC-CCCH-----HHHHHCCCCEEEEECCCHHHCCH
Q ss_conf             79998445687675310358999999999642013589998516544-4414-----67885056305720368111003
Q gi|254780606|r  530 YIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSV-DVIT-----GTIKANFPIRISFQVTSKIDSRT  603 (744)
Q Consensus       530 ~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~-~vi~-----~~ik~n~~~ri~~~v~~~~dsr~  603 (744)
T Consensus       390 ~vLlLLDEF~aLGkL--~iie~Ala~----mAGYGiRl~lI~Qsl~QL~~~YGe~~a~tilsN~~vrI~fapnD~eTAk~  463 (670)
T PRK13850        390 EVLFLLDEFKHLGKL--EAIETAITT----IAGYKGRFMFIIQSLSALTGTYDEAGKQNFLSNTGVQVFMATADDETPTY  463 (670)
T ss_pred             EEEEEECCCCCCCCH--HHHHHHHHH----HCCCCCEEEEEEECHHHHHHHHCHHHHHHHHHCCCEEEEECCCCHHHHHH
T ss_conf             079986064105874--899999998----62568789999847999998858415678872572699965797766999


Q ss_pred             HCCCCCH----------------------------------HHHCCCCCEEEECCCCCEEEEEEC-CCCHHHHHHHHHH
Q ss_conf             2676316----------------------------------885689846864689843899934-3898899999999
Q gi|254780606|r  604 ILGEHGA----------------------------------EQLLGRGDMLYMSGGGRIQRVHGP-LVSDIEIEKVVQH  647 (744)
Q Consensus       604 il~~~ga----------------------------------e~l~g~gd~l~~~~~~~~~r~~~~-~~~~~~~~~~~~~  647 (744)
T Consensus       464 iS~~LG~~T~~~~s~S~~~~r~~~~s~s~seq~RpLLtP~Evr~Lp~d~eIvlv~G~~PI~akKirYY~D~~fk~i~~~  542 (670)
T PRK13850        464 ISKAIGDYTFKARSTSYSQARMFDHNIQISDQGAPLLRPEQVRLLDDDYEIVLIKGQPPLKLRKVRYYSDRELKRIFEA  542 (670)
T ss_pred             HHHHHCHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCEEECEEEECCCHHHHHHHHH
T ss_conf             9998482134533110367877788744002667689978995399876699806999703333154158888888874