HHsearch alignment for GI: 254780606 and conserved domain: PRK13853
>PRK13853 type IV secretion system protein VirB4; Provisional.
Probab=99.15 E-value=3.9e-08 Score=74.79 Aligned_cols=266 Identities=18% Similarity=0.236 Sum_probs=141.7
Q ss_pred ECCCCEEEEECCCCCCCEEEHHHHHC---CHHHCC----CCCCEEEEEEECCCCCEEECCHH--HCCCEEEEECCCCCHH
Q ss_conf 18983454426888887076587512---812114----67836898420578873211201--1484699707875344
Q gi|254780606|r 356 IPKRNAIGIELPNETRETVYLRQIIE---SRSFSH----SKANLALCLGKTISGESVIADLA--NMPHILVAGTTGSGKS 426 (744)
Q Consensus 356 ~pg~~~~~~~~p~~~~~~v~~~~~~~---~~~~~~----~~~~l~~~~g~~~~g~~~~~dl~--~~PH~lvaG~TgsGKS 426 (744)
T Consensus 366 LPGn~~-----~~~R~~~iss~N~A~l~plh~~~~G~~~g~wg~al~~~~T~~gtPf~fn~H~~d~GHt~I~G~TGsGKT 440 (789)
T PRK13853 366 LPGNRK-----WRTRPGAITSRNFAGLVSFENFPEGARSGHWGNAIARFRTNGGTPFDYIPHEHDVGMTAIFGPIGRGKT 440 (789)
T ss_pred CCCCCC-----CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCEEEECCCCCCHH
T ss_conf 998621-----345766443989986651048878888889998753425499982586378788774488789999889
Q ss_pred HHHHHHHHHHHHHCCH-HHEEEEEECCCCCE-E------CCCC----CCCCEEEEE--EECHHHHHHH-HHHHHHHHH--
Q ss_conf 7999999999985680-11079997234210-0------0125----775200004--4441787689-999998667--
Q gi|254780606|r 427 VAINTMIMSLLYRLRP-DECRMIMVDPKMLE-L------SVYD----GIPHLLTPV--VTNPKKAVMA-LKWAVREME-- 489 (744)
Q Consensus 427 ~~l~~~i~sl~~~~~p-~~~~~~liD~k~~~-~------~~~~----~~ph~~~~v--~~~~~~~~~~-l~~~~~em~-- 489 (744)
T Consensus 441 tll~fL~aq~-~ky~~~~~~~~~~fDkd~s~~i~~~a~GG~y~~i~~g~~tg~nPl~~l~~t~~~~~fl~~wl~~l~~~~ 519 (789)
T PRK13853 441 TLMTFILAML-EQSMVDRAGAVVFFDKDRGGELLVRATGGTYLALRRGVPSGLAPLRGLENTAASRDFLREWIVALIESD 519 (789)
T ss_pred HHHHHHHHHH-HHHHCCCCCEEEEEECCCCHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999-974223577089995886389999982987761269995684876568998688999999999999725
Q ss_pred --------HHH-------HHHH-HCCCCCHHHHHH------------HHHHHHCCCC-----CCCCC-----------C-
Q ss_conf --------699-------9999-807786799999------------8864202677-----66654-----------3-
Q gi|254780606|r 490 --------ERY-------RKMS-HLSVRNIKSYNE------------RISTMYGEKP-----QGCGD-----------D- 524 (744)
Q Consensus 490 --------~r~-------~~~~-~~~~~~i~~~n~------------~~~~~~~~~~-----~~~~~-----------~- 524 (744)
T Consensus 520 g~~~lt~~~~~~i~~av~~~~~~~~~~r~ls~l~~~l~~~~~~~~~~rL~~w~~~g~~gwlfD~~~D~l~~~~~~~gfd~ 599 (789)
T PRK13853 520 GRGGISPEENRRLVRGIHRQLSFDPDMRSLAGLREFLLHGPAEGAGARLQRWCRGNALGWAFDGEVDEVKLDPSITGFDM 599 (789)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEC
T ss_conf 99999999999999999998608831078989999845588216999999985499704403686546588787799861
Q ss_pred ------------------------CCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCC-
Q ss_conf ------------------------2338679998445687675310358999999999642013589998516544441-
Q gi|254780606|r 525 ------------------------MRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVI- 579 (744)
Q Consensus 525 ------------------------~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi- 579 (744)
T Consensus 600 ~~ll~~~~~~~pvl~YLf~rie~~ldGrp-~ii~lDE~w~~l~--~~~f~~~i~~wlkt~RK~N~~vv~aTQs~~-d~~~ 675 (789)
T PRK13853 600 THLLEYEEVCAPAAAYLLHRIGAMVDGRR-FVMSCDEFRAYLL--NPKFAAVVDKFLLTVRKNNGMLILATQQPE-HVLE 675 (789)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHCCCC-EEEEEHHHHHHHC--CHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHC
T ss_conf 78527851289999999999998606996-6999456667646--999999999999999874908999648999-9863
Q ss_pred ---HHHHHHCCCCEEEEECCCHH--HCCHHCCCCCHHH-H------CCCCCEEEECCC-CCEEEE
Q ss_conf ---46788505630572036811--1003267631688-5------689846864689-843899
Q gi|254780606|r 580 ---TGTIKANFPIRISFQVTSKI--DSRTILGEHGAEQ-L------LGRGDMLYMSGG-GRIQRV 631 (744)
Q Consensus 580 ---~~~ik~n~~~ri~~~v~~~~--dsr~il~~~gae~-l------~g~gd~l~~~~~-~~~~r~ 631 (744)
T Consensus 676 s~i~~~i~e~~~T~I~LPNp~A~~~~y~~~~gLt~~e~~~I~~~~~~~sR~flikq~~~s~~~~l 740 (789)
T PRK13853 676 SPLGASLVAQCMTKIFYPSPTADRSAYIDGLKCTEKEFQAIREDMAVGSRKFLLKRESGSVICEF 740 (789)
T ss_pred CCHHHHHHHHCCEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCEEEEEE
T ss_conf 82789999868867988896647788875339999999999863697562699981895089994