HHsearch alignment for GI: 254780606 and conserved domain: PRK13873
>PRK13873 conjugal transfer ATPase TrbE; Provisional.
Probab=99.33 E-value=5.2e-08 Score=73.94 Aligned_cols=289 Identities=17% Similarity=0.231 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC---E--E-------EEECCCC
Q ss_conf 89999998740355138986764892589997548886399998599999987147763---2--7-------7518983
Q gi|254780606|r 293 NAGSLETILEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLSA---R--V-------AVIPKRN 360 (744)
Q Consensus 293 ~~~~l~~~l~~~~~~~~~~~~~~gp~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~~~~---~--~-------~~~pg~~ 360 (744)
T Consensus 311 ~a~dad~AL~eL~sg~~~~G~~~-~Tv~v~~~------~~~~l~~~~~~v~~~l~~~Gf~~~~Etlna~~A~~aqLPGn~ 383 (815)
T PRK13873 311 KAADADAALQELGADQVGFAYVT-ATVTVWDA------DPRVADEKLRLVEKVIQGRDFTCMPETLNAVEAWLGSLPGHV 383 (815)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEE-EEEEEECC------CHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCC
T ss_conf 99989999999857981258756-89999789------999999999999999985895799813121999986099986
Q ss_pred EEEEECCCCCCCEEEHHHHHC---CHHH------CCCCCCEEEEEEECCCCCEEECCHH--HCCCEEEEECCCCCHHHHH
Q ss_conf 454426888887076587512---8121------1467836898420578873211201--1484699707875344799
Q gi|254780606|r 361 AIGIELPNETRETVYLRQIIE---SRSF------SHSKANLALCLGKTISGESVIADLA--NMPHILVAGTTGSGKSVAI 429 (744)
Q Consensus 361 ~~~~~~p~~~~~~v~~~~~~~---~~~~------~~~~~~l~~~~g~~~~g~~~~~dl~--~~PH~lvaG~TgsGKS~~l 429 (744)
T Consensus 384 ~~-----n~R~~~iss~N~a~l~pl~~~~~G~~~n~~~~~p~l~~~~T~g~tPf~fN~H~gdvGHtlI~GpTGsGKTvll 458 (815)
T PRK13873 384 YA-----NVRQPPVSTLNLAHMMPLSAVWAGPERNEHLDGPPLLYGRTEGSTPFRLSLHVGDVGHTLVVGPTGAGKSVLL 458 (815)
T ss_pred CC-----CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCEEEECCCCCCHHHHH
T ss_conf 56-----6645644357777645424677899889999988058863489996687664688764389788999899999
Q ss_pred HHHHHHHHHHCCHHHEEEEEECCCCC-EE------CCCCCC----------CCEEEEE--EECHHHHHHHHHHHHHHHHH
Q ss_conf 99999999856801107999723421-00------012577----------5200004--44417876899999986676
Q gi|254780606|r 430 NTMIMSLLYRLRPDECRMIMVDPKML-EL------SVYDGI----------PHLLTPV--VTNPKKAVMALKWAVREMEE 490 (744)
Q Consensus 430 ~~~i~sl~~~~~p~~~~~~liD~k~~-~~------~~~~~~----------ph~~~~v--~~~~~~~~~~l~~~~~em~~ 490 (744)
T Consensus 459 ~~l~~q-~~ry~~~--~vf~FDkd~s~~i~~~a~GG~y~~lg~~~~~~~~~~~~f~Pl~~~d~~~~r~~~~~wi~~ll~~ 535 (815)
T PRK13873 459 ALMALQ-FRRYPGS--QVFAFDFGGSIRAAALAMGGDWHDLGGGLSDGADGSVALQPLARIDDPAERAWAAEWIAAILAR 535 (815)
T ss_pred HHHHHH-HHHCCCC--CEEEEECCCCHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999-8644898--4899978987899999829987603565556789987779876889978889999999999961
Q ss_pred ---------HHHH------HHH--CCCCCHHHHHHHH---------HHHHCCCCCC-----CCCC---------------
Q ss_conf ---------9999------998--0778679999988---------6420267766-----6543---------------
Q gi|254780606|r 491 ---------RYRK------MSH--LSVRNIKSYNERI---------STMYGEKPQG-----CGDD--------------- 524 (744)
Q Consensus 491 ---------r~~~------~~~--~~~~~i~~~n~~~---------~~~~~~~~~~-----~~~~--------------- 524 (744)
T Consensus 536 ~g~~~tp~~~~~i~~Av~~l~~~~~~~Rtls~l~~~l~~~~L~~~L~~w~~~G~~G~lfD~~~D~l~~~~~~~Fe~~~l~ 615 (815)
T PRK13873 536 EGVAVTPEVKEHIWSALTSLASAPVEERTLTGLSVLLQSNALKQALRPYCLGGPYGRLLDAEHERLGSADVQAFETEGLM 615 (815)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCEEEECCCCC
T ss_conf 79888989999999999998519852173999998818814999999983789845426886567776773699873037
Q ss_pred -------------------CCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCC----HH
Q ss_conf -------------------2338679998445687675310358999999999642013589998516544441----46
Q gi|254780606|r 525 -------------------MRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVI----TG 581 (744)
Q Consensus 525 -------------------~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi----~~ 581 (744)
T Consensus 616 ~~~~~~pvl~YLf~rie~~lDGrp-tli~iDEaW~~-L~~-~~F~~~i~~wLkT~RK~N~~vv~aTQS~~-di~~S~I~~ 691 (815)
T PRK13873 616 GTAAAPAVLSYLFHRIEDRFDGRP-TLLILDEGWLA-LDD-PVFAAQLREWLKTLRKKNASVIFATQSLA-DIDDSAIAP 691 (815)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCC-EEEEHHHHHHH-HCC-HHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHCCCHHH
T ss_conf 865178999999999999758996-69975865877-289-89999999999999870877999778889-986496689
Q ss_pred HHHHCCCCEEEEECCCHHH
Q ss_conf 7885056305720368111
Q gi|254780606|r 582 TIKANFPIRISFQVTSKID 600 (744)
Q Consensus 582 ~ik~n~~~ri~~~v~~~~d 600 (744)
T Consensus 692 aiie~c~T~IfLPNp~A~~ 710 (815)
T PRK13873 692 AIIESCPTRIFLPNERAIE 710 (815)
T ss_pred HHHHHCCEEEECCCCCCCC
T ss_conf 9998688569877822277