HHsearch alignment for GI: 254780606 and conserved domain: PRK13894
>PRK13894 conjugal transfer ATPase TrbB; Provisional.
Probab=97.40 E-value=0.0084 Score=38.21 Aligned_cols=140 Identities=20% Similarity=0.272 Sum_probs=70.9
Q ss_pred HHHHHHHCCCCEEEEEEEECCCEEEE-E--EECCCCCCHHHHHHHHHHHHHHHCC---------------CCCEE-EEEC
Q ss_conf 99987403551389867648925899-9--7548886399998599999987147---------------76327-7518
Q gi|254780606|r 297 LETILEEFGIKGEIINVNPGPVVTLY-E--FEPAPGIKSSRVIGLADDIARSMSS---------------LSARV-AVIP 357 (744)
Q Consensus 297 l~~~l~~~~~~~~~~~~~~gp~~~~~-~--~~~~~g~~~~~~~~~~~d~~~~~~~---------------~~~~~-~~~p 357 (744)
T Consensus 27 l~~~L~Dp~VtEI~iN-~~~~Vwver~G~~~~~~~~l~~~~~~~~i~~lA~~~g~~i~~~~Pi~da~Lp~dG~R~~~~~p 105 (320)
T PRK13894 27 LLAALNDPKTVEIMLN-ADGKLWLERLGEPMRCIGTLRVAQAQAIIETIAGYHGKEVTRSKPILEGELPLDGSRFAGQLP 105 (320)
T ss_pred HHHHHCCCCCEEEEEC-CCCEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHCCEECCCCCEEEEEECCCCEEEEEECC
T ss_conf 9997179996799986-999599994890585167689999999999999980987467896699990899889999878
Q ss_pred ---CCCEEEEECCCCCCCEEEHHHHHCCHHHCCCCCCEEEEEEECCCCCEEECCHH-HCCCEEEEECCCCCHHHHHHHHH
Q ss_conf ---98345442688888707658751281211467836898420578873211201-14846997078753447999999
Q gi|254780606|r 358 ---KRNAIGIELPNETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVIADLA-NMPHILVAGTTGSGKSVAINTMI 433 (744)
Q Consensus 358 ---g~~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~l~~~~g~~~~g~~~~~dl~-~~PH~lvaG~TgsGKS~~l~~~i 433 (744)
T Consensus 106 P~~~~~~~sIRk~~~~--~~tL~dlv~~G~~~~~~a-------------~~L~~~V~~r~nilI~G~TgsGKTTll~all 170 (320)
T PRK13894 106 PVVPAPTFAIRKKAVA--IFTLDQYVERGIMTAEQR-------------EAIIAAVRAHRNILVIGGTGSGKTTLVNAII 170 (320)
T ss_pred CCCCCCEEEEECCCCC--CCCHHHHHHCCCCCHHHH-------------HHHHHHHHCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 8789965999686899--999999987699999999-------------9999999728758998588865689999998
Q ss_pred HHHHHHCCHHHEEEEEE-CCCC
Q ss_conf 99998568011079997-2342
Q gi|254780606|r 434 MSLLYRLRPDECRMIMV-DPKM 454 (744)
Q Consensus 434 ~sl~~~~~p~~~~~~li-D~k~ 454 (744)
T Consensus 171 ~~i~~-~~p~e-RivtIED~~E 190 (320)
T PRK13894 171 NEMVI-QDPTE-RVFIIEDTGE 190 (320)
T ss_pred HHHCC-CCCCC-CEEEECCHHH
T ss_conf 63202-69520-1775258788