HHsearch alignment for GI: 254780606 and conserved domain: PRK13897

>PRK13897 type IV secretion system component VirD4; Provisional.
Probab=96.03  E-value=0.0026  Score=41.72  Aligned_cols=66  Identities=17%  Similarity=0.266  Sum_probs=41.7

Q ss_pred             EEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC--CCCC----HHHHHHCCCCEEEEECCCHHHCC
Q ss_conf             999844568767531035899999999964201358999851654--4441----46788505630572036811100
Q gi|254780606|r  531 IVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS--VDVI----TGTIKANFPIRISFQVTSKIDSR  602 (744)
Q Consensus       531 ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~--~~vi----~~~ik~n~~~ri~~~v~~~~dsr  602 (744)
T Consensus       407 VLfLLDEFanLGk-----Ip-~fekaiA~mrGYGIrl~lIiQslsQLk~~YG~~~a~tIl~Nc~~~I~f~~nD~eTAk  478 (628)
T PRK13897        407 VLFLMDEFPTLGK-----ME-QFKTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETAN  478 (628)
T ss_pred             EEEEECCCCCCCC-----HH-HHHHHHHHHHCCCCEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEECCCCHHHHH
T ss_conf             8998510021487-----48-899999987036878999997699999885734477898558637986689753499