HHsearch alignment for GI: 254780606 and conserved domain: PRK13900
>PRK13900 type IV secretion system ATPase VirB11; Provisional.
Probab=97.97 E-value=0.00093 Score=44.75 Aligned_cols=218 Identities=21% Similarity=0.252 Sum_probs=101.7
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHC-------------C-CCCEE-EEEC-----CCCEEEEECCCCCCCEEEHHHHHCCHH
Q ss_conf 54888639999859999998714-------------7-76327-7518-----983454426888887076587512812
Q gi|254780606|r 325 EPAPGIKSSRVIGLADDIARSMS-------------S-LSARV-AVIP-----KRNAIGIELPNETRETVYLRQIIESRS 384 (744)
Q Consensus 325 ~~~~g~~~~~~~~~~~d~~~~~~-------------~-~~~~~-~~~p-----g~~~~~~~~p~~~~~~v~~~~~~~~~~ 384 (744)
T Consensus 46 ~~~~~~~~~~l~~l~~~ia~~~~~~~~~~~P~l~a~Lp~G~Rv~~v~pp~~~~g~~~ltIRk~--~~~~~tl~dl~~~G~ 123 (332)
T PRK13900 46 EQIPELDLSHLKALGRLIAQATEQKISEEKPLLSATLPNGYRIQIVFPPACEIGQIIYSIRKP--SGMQLTLDDYEKMGA 123 (332)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEEECC--CCCCCCHHHHHHCCC
T ss_conf 057759999999999999998099666789668999189846899837831599847999788--888899999986498
Q ss_pred HCCCCCCEEE-E----EEEC-CCCC--EEECCHH-HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC
Q ss_conf 1146783689-8----4205-7887--3211201-148469970787534479999999999856801107999723421
Q gi|254780606|r 385 FSHSKANLAL-C----LGKT-ISGE--SVIADLA-NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML 455 (744)
Q Consensus 385 ~~~~~~~l~~-~----~g~~-~~g~--~~~~dl~-~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~ 455 (744)
T Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~fL~~aV~~r~NilI~G~TgSGKTTll~aL~~~-----ip~~eRiitIED-t~ 197 (332)
T PRK13900 124 FDETATESLVDEDDVILNELLAEKKIKEFLEHAVISKKNIIISGGTSTGKTTFTNAALRE-----IPAIERLITVED-AR 197 (332)
T ss_pred CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC-----CCCCCCEEEECC-CH
T ss_conf 665554201341567788764105799999999864871999888898899999999835-----895353566314-06
Q ss_pred EECCCC--CCCCEEEEEEECHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE
Q ss_conf 000125--775200004444178768999999-86676999999807786799999886420267766654323386799
Q gi|254780606|r 456 ELSVYD--GIPHLLTPVVTNPKKAVMALKWAV-REMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIV 532 (744)
Q Consensus 456 ~~~~~~--~~ph~~~~v~~~~~~~~~~l~~~~-~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~iv 532 (744)
T Consensus 198 EL~l~~~pn~v~l~~~~~~-~g~~~vt~~~Ll~~aLR~r-------------------------------------PD-R 238 (332)
T PRK13900 198 EIVLSSHPNRVHLLASKGG-QGRAKVTTQDLIEACLRLR-------------------------------------PD-R 238 (332)
T ss_pred HHCCCCCCCEEEEEECCCC-CCCCEECHHHHHHHHHCCC-------------------------------------CC-E
T ss_conf 6356668888999971688-8866086999999975689-------------------------------------97-5
Q ss_pred EEHHHHH-----HHH------------HHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEEC
Q ss_conf 9844568-----767------------53103589999999996420135899985165444414678850563057203
Q gi|254780606|r 533 IIVDEMA-----DLM------------MVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQV 595 (744)
Q Consensus 533 vviDE~a-----~l~------------~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v 595 (744)
T Consensus 239 IivGEvRG~EA~~~l~A~nTGH~Gs~tTiHA~sa~~a~~Rl~~l~~~~~~~-------~~~~~i~~~i~~aiDvVV~~~r 311 (332)
T PRK13900 239 IIVGELRGAEAFSFLRAINTGHPGSISTLHADSPAMAIEQLKLMVMQAGLG-------MPPDQIKKYILNVVDIVVQLKR 311 (332)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHCCC-------CCHHHHHHHHHHHCCEEEEEEE
T ss_conf 844555719999999999769997114627899999999999999851689-------8999999999985899999988
Q ss_pred C
Q ss_conf 6
Q gi|254780606|r 596 T 596 (744)
Q Consensus 596 ~ 596 (744)
T Consensus 312 ~ 312 (332)
T PRK13900 312 G 312 (332)
T ss_pred C
T ss_conf 4