HHsearch alignment for GI: 254780606 and conserved domain: PTZ00209
>PTZ00209 retrotransposon hot spot protein; Provisional.
Probab=93.35 E-value=0.26 Score=27.97 Aligned_cols=54 Identities=17% Similarity=0.357 Sum_probs=38.4
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCC
Q ss_conf 1484699707875344799999999998568011079997234210001257752
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPH 465 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph 465 (744)
T Consensus 172 P~~~vLI-GTPGIGKSm~aGSyLLYqLLHyDae~L~vVay~~g~~aylf~~k~~~ 225 (693)
T PTZ00209 172 PPTHIVI-GISGIGKSCGVGSFLLHSLLHFHEGMLDVVVYFTDVKAYLIYNKKGN 225 (693)
T ss_pred CCCEEEE-CCCCCCCCCCCHHHHHHHHHHCCHHHCCEEEEEECCEEEEEEECCCC
T ss_conf 9852897-89975533342899999987135745858999966768999855898