HHsearch alignment for GI: 254780606 and conserved domain: TIGR01073
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA; InterPro: IPR005751 The DNA helicase PcrA is found mainly in Gram-positive bacteria and belongs to a superfamily of helicases, together with Rep and UvrD helicases from Escherichia coli. The action of the 3'5' bacterial DNA helicase is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilising the duplex and separating the two strands in an active process .; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=94.08 E-value=0.13 Score=30.05 Aligned_cols=31 Identities=32% Similarity=0.512 Sum_probs=26.7
Q ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 11484699707875344799999999998568
Q gi|254780606|r 410 ANMPHILVAGTTGSGKSVAINTMIMSLLYRLR 441 (744)
Q Consensus 410 ~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~ 441 (744)
T Consensus 16 t~GPLLi~AGA-GSGKTRVLThRIA~L~~e~~ 46 (811)
T TIGR01073 16 TEGPLLIMAGA-GSGKTRVLTHRIAHLLAEKN 46 (811)
T ss_pred CCCCCEEEECC-CCCCCHHHHHHHHHHHHHCC
T ss_conf 37841010137-88731057899999997223