HHsearch alignment for GI: 254780606 and conserved domain: TIGR01447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=94.88 E-value=0.31 Score=27.43 Aligned_cols=126 Identities=21% Similarity=0.338 Sum_probs=68.8
Q ss_pred EEEEEECCCCCE------EECCH-HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCC
Q ss_conf 898420578873------21120-11484699707875344799999999998568011079997234210001257752
Q gi|254780606|r 393 ALCLGKTISGES------VIADL-ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPH 465 (744)
Q Consensus 393 ~~~~g~~~~g~~------~~~dl-~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph 465 (744)
T Consensus 216 ~f~~~~~~~~~~~~D~Q~~a~~~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~~-~~-----------------~G~~~ 277 (753)
T TIGR01447 216 LFPLLNEQNGRKVTDWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALIKQS-PK-----------------QGKPR 277 (753)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHH-HH-----------------CCCCC
T ss_conf 8542104544311379999999986087689987988977899999999999989-86-----------------49974
Q ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHHHH---------HHHC--CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE
Q ss_conf 00004444178768999999866769999---------9980--778679999988642026776665432338679998
Q gi|254780606|r 466 LLTPVVTNPKKAVMALKWAVREMEERYRK---------MSHL--SVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVII 534 (744)
Q Consensus 466 ~~~~v~~~~~~~~~~l~~~~~em~~r~~~---------~~~~--~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvv 534 (744)
T Consensus 278 ~~I~l~APTGKAa~RL~esl~~~~~~L~~~~~aid~~~~~~~~~~~~TiHr---LLG~~~I~~~~fr~h~~N~L~~DVLv 354 (753)
T TIGR01447 278 LRIALAAPTGKAAARLAESLRKAVKKLAAENMAIDEDLIAALPSEATTIHR---LLGIKPIDTKRFRHHERNPLPLDVLV 354 (753)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHH---HHCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 047886684479999999999886322342366587985487204568888---61661478767767777889855278
Q ss_pred HHHHH
Q ss_conf 44568
Q gi|254780606|r 535 VDEMA 539 (744)
Q Consensus 535 iDE~a 539 (744)
T Consensus 355 vDEaS 359 (753)
T TIGR01447 355 VDEAS 359 (753)
T ss_pred ECCCH
T ss_conf 70600