HHsearch alignment for GI: 254780606 and conserved domain: TIGR01842

>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=96.15  E-value=0.0093  Score=37.91  Aligned_cols=150  Identities=24%  Similarity=0.320  Sum_probs=84.4

Q ss_pred             HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCC----CCCC---EEE-EEE---------EC
Q ss_conf             148469970787534479999999999856801107999723421000125----7752---000-044---------44
Q gi|254780606|r  411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYD----GIPH---LLT-PVV---------TN  473 (744)
Q Consensus       411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~----~~ph---~~~-~v~---------~~  473 (744)
T Consensus       355 aGe~laIIGPSgSGKStLaR~~vG~--W~~~~G~VRLDGadl~qWD~e~lG~~iGYLPQdvELF~GTva~NIARF~en~d  432 (556)
T TIGR01842       355 AGEALAIIGPSGSGKSTLARILVGI--WPPASGSVRLDGADLKQWDRETLGKHIGYLPQDVELFSGTVAENIARFGENAD  432 (556)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHC--CCCCCCCEEEEHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
T ss_conf             7745888747865258898788721--01356533640334402375365880154798505076767640244688788


Q ss_pred             HHHHHHHHHHH-HHHHHHH----HHHHHHCCCCCH-HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCH
Q ss_conf             17876899999-9866769----999998077867-99999886420267766654323386799984456876753103
Q gi|254780606|r  474 PKKAVMALKWA-VREMEER----YRKMSHLSVRNI-KSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGK  547 (744)
Q Consensus       474 ~~~~~~~l~~~-~~em~~r----~~~~~~~~~~~i-~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~  547 (744)
T Consensus       433 ~~~iieAAklAGvHElIl~lP~GYDT~iG~~G~~LSGGQRQRIaLARAly---------G~P~l-vvLDEPNsNL---D~  499 (556)
T TIGR01842       433 PEKIIEAAKLAGVHELILRLPDGYDTDIGEGGATLSGGQRQRIALARALY---------GDPKL-VVLDEPNSNL---DE  499 (556)
T ss_pred             HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---------CCCEE-EEECCCCCCC---CH
T ss_conf             78999999760303575169688544313777778614689999999871---------79837-8732889876---61


Q ss_pred             HHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf             5899999999964201358999851654
Q gi|254780606|r  548 EIEGAIQRLAQMARAAGIHLIMATQRPS  575 (744)
Q Consensus       548 ~~e~~~~~la~~~ra~GihlilatQrp~  575 (744)
T Consensus       500 ~GE~AL~~Ai~~lK~rg~tvv~itHRp~  527 (556)
T TIGR01842       500 EGEQALANAIKALKARGITVVVITHRPS  527 (556)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEECHHH
T ss_conf             7899999999999867972899841068