HHsearch alignment for GI: 254780606 and conserved domain: TIGR02524

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB; InterPro: IPR013363 Proteins in this entry are the DotB component of Dot/Icm secretion systems, as found in the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This family is most closely related to the TraJ proteins of plasmid transfer (IPR013364 from INTERPRO), rather than to proteins of other type IV secretion systems..
Probab=94.82  E-value=0.027  Score=34.71  Aligned_cols=126  Identities=24%  Similarity=0.355  Sum_probs=66.6

Q ss_pred             CCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCCEEEHHHHHCCH
Q ss_conf             35513898676489258999754888639999859999998714776327751898345442688888707658751281
Q gi|254780606|r  304 FGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLSARVAVIPKRNAIGIELPNETRETVYLRQIIESR  383 (744)
Q Consensus       304 ~~~~~~~~~~~~gp~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~pg~~~~~~~~p~~~~~~v~~~~~~~~~  383 (744)
T Consensus        58 yGPn~ttq~~~G~didthye~rPnr~~r~ryr~n----------~t~C---~v~Gh~~iqit~r----------~iP~-~  113 (358)
T TIGR02524        58 YGPNATTQLLRGKDIDTHYEIRPNRNVRYRYRVN----------ATAC---LVEGHEAIQITLR----------AIPA-E  113 (358)
T ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEE----------CEEE---EEECCCCEEEEEE----------ECCC-C
T ss_conf             1875211232045222100004677750467870----------4044---5205550477876----------4279-8


Q ss_pred             HHCCCCCCEEEEEEECCCCCEEECCHH-HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCC
Q ss_conf             211467836898420578873211201-1484699707875344799999999998568011079997234210001257
Q gi|254780606|r  384 SFSHSKANLALCLGKTISGESVIADLA-NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDG  462 (744)
Q Consensus       384 ~~~~~~~~l~~~~g~~~~g~~~~~dl~-~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~  462 (744)
T Consensus       114 PP~ls~~~lP~~i---------~~aiaPqeG~v~~tGatGsGkstlla~iirel~e--~~ds~rk~ltye~Pie~-vyd~  181 (358)
T TIGR02524       114 PPKLSKLDLPDAI---------VEAIAPQEGVVYVTGATGSGKSTLLAAIIRELIE--ASDSNRKVLTYEAPIEY-VYDE  181 (358)
T ss_pred             CCCCCCCCCHHHH---------HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--CCCCCCEEEEECCCHHH-HHHC
T ss_conf             8744311341799---------9851788866998626776368899999999860--67656414642263233-2211


Q ss_pred             CCC
Q ss_conf             752
Q gi|254780606|r  463 IPH  465 (744)
Q Consensus       463 ~ph  465 (744)
T Consensus       182 ~~t  184 (358)
T TIGR02524       182 LET  184 (358)
T ss_pred             CCC
T ss_conf             010