HHsearch alignment for GI: 254780606 and conserved domain: TIGR02524
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB; InterPro: IPR013363 Proteins in this entry are the DotB component of Dot/Icm secretion systems, as found in the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This family is most closely related to the TraJ proteins of plasmid transfer (IPR013364 from INTERPRO), rather than to proteins of other type IV secretion systems..
Probab=94.82 E-value=0.027 Score=34.71 Aligned_cols=126 Identities=24% Similarity=0.355 Sum_probs=66.6
Q ss_pred CCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCCEEEHHHHHCCH
Q ss_conf 35513898676489258999754888639999859999998714776327751898345442688888707658751281
Q gi|254780606|r 304 FGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLSARVAVIPKRNAIGIELPNETRETVYLRQIIESR 383 (744)
Q Consensus 304 ~~~~~~~~~~~~gp~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~pg~~~~~~~~p~~~~~~v~~~~~~~~~ 383 (744)
T Consensus 58 yGPn~ttq~~~G~didthye~rPnr~~r~ryr~n----------~t~C---~v~Gh~~iqit~r----------~iP~-~ 113 (358)
T TIGR02524 58 YGPNATTQLLRGKDIDTHYEIRPNRNVRYRYRVN----------ATAC---LVEGHEAIQITLR----------AIPA-E 113 (358)
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEE----------CEEE---EEECCCCEEEEEE----------ECCC-C
T ss_conf 1875211232045222100004677750467870----------4044---5205550477876----------4279-8
Q ss_pred HHCCCCCCEEEEEEECCCCCEEECCHH-HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCC
Q ss_conf 211467836898420578873211201-1484699707875344799999999998568011079997234210001257
Q gi|254780606|r 384 SFSHSKANLALCLGKTISGESVIADLA-NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDG 462 (744)
Q Consensus 384 ~~~~~~~~l~~~~g~~~~g~~~~~dl~-~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~ 462 (744)
T Consensus 114 PP~ls~~~lP~~i---------~~aiaPqeG~v~~tGatGsGkstlla~iirel~e--~~ds~rk~ltye~Pie~-vyd~ 181 (358)
T TIGR02524 114 PPKLSKLDLPDAI---------VEAIAPQEGVVYVTGATGSGKSTLLAAIIRELIE--ASDSNRKVLTYEAPIEY-VYDE 181 (358)
T ss_pred CCCCCCCCCHHHH---------HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--CCCCCCEEEEECCCHHH-HHHC
T ss_conf 8744311341799---------9851788866998626776368899999999860--67656414642263233-2211
Q ss_pred CCC
Q ss_conf 752
Q gi|254780606|r 463 IPH 465 (744)
Q Consensus 463 ~ph 465 (744)
T Consensus 182 ~~t 184 (358)
T TIGR02524 182 LET 184 (358)
T ss_pred CCC
T ss_conf 010