HHsearch alignment for GI: 254780606 and conserved domain: TIGR02788
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=97.85 E-value=6.5e-05 Score=52.70 Aligned_cols=213 Identities=22% Similarity=0.274 Sum_probs=118.0
Q ss_pred EEEEEEECCCC---CCHHHHHHHHHHHHHHH--C---------------CCCCEE-EEE-----CC-CCEEEEECCCCCC
Q ss_conf 58999754888---63999985999999871--4---------------776327-751-----89-8345442688888
Q gi|254780606|r 319 VTLYEFEPAPG---IKSSRVIGLADDIARSM--S---------------SLSARV-AVI-----PK-RNAIGIELPNETR 371 (744)
Q Consensus 319 ~~~~~~~~~~g---~~~~~~~~~~~d~~~~~--~---------------~~~~~~-~~~-----pg-~~~~~~~~p~~~~ 371 (744)
T Consensus 29 ~~~~d~---P~rkaLT~~~l~~La~~~A~~~nt~q~is~y~~P~LSa~LP~G~RvQ~V~PPAc~~~eTvs~tIRKp--S~ 103 (328)
T TIGR02788 29 TQRFDV---PERKALTFSHLRRLARAVASFSNTKQSISEYENPILSATLPGGERVQIVIPPACENDETVSITIRKP--SL 103 (328)
T ss_pred EEEEEC---CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEECC--CC
T ss_conf 888726---7522441899999999988765378620102286378886999479998068758988589999526--44
Q ss_pred CEEEHHHHHCCHHHCCCCCCEEEEEEE-CCCCCEEECCH------------H--HCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 707658751281211467836898420-57887321120------------1--14846997078753447999999999
Q gi|254780606|r 372 ETVYLRQIIESRSFSHSKANLALCLGK-TISGESVIADL------------A--NMPHILVAGTTGSGKSVAINTMIMSL 436 (744)
Q Consensus 372 ~~v~~~~~~~~~~~~~~~~~l~~~~g~-~~~g~~~~~dl------------~--~~PH~lvaG~TgsGKS~~l~~~i~sl 436 (744)
T Consensus 104 ~~~sL~dy~~~G~F~~ar~~-~~~~~~~~~d~~~~L~el~~~g~~~~Fl~~Ai~~~knIii~GGTgSGKTTf~kal~--- 179 (328)
T TIGR02788 104 VDLSLDDYEEKGFFDTARAV-VVPASTELSDKDEELLELLDAGDIKEFLRLAIASRKNIIISGGTGSGKTTFLKALV--- 179 (328)
T ss_pred CCCCHHHHHHCCCCCEEEEE-ECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH---
T ss_conf 45547999627985447776-31443443468999999986288879999998738919999068971899999997---
Q ss_pred HHHCCHHHEEEEEE-CCCCCEECCCCCCCCEEEEEE-EC---HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHH
Q ss_conf 98568011079997-234210001257752000044-44---178768999999866769999998077867999-9988
Q gi|254780606|r 437 LYRLRPDECRMIMV-DPKMLELSVYDGIPHLLTPVV-TN---PKKAVMALKWAVREMEERYRKMSHLSVRNIKSY-NERI 510 (744)
Q Consensus 437 ~~~~~p~~~~~~li-D~k~~~~~~~~~~ph~~~~v~-~~---~~~~~~~l~~~~~em~~r~~~~~~~~~~~i~~~-n~~~ 510 (744)
T Consensus 180 --~~IP~~ER~iTIED~~E~~~~hhpN~V~L~ysk~v~~g~~~vt~~~Ll~scLRMrPDR-I~LgELRG~Eaf~F~~~~- 255 (328)
T TIGR02788 180 --KEIPKDERLITIEDTRELFLPHHPNKVHLFYSKGVGQGSAKVTPKDLLESCLRMRPDR-ILLGELRGDEAFDFIRAV- 255 (328)
T ss_pred --HCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCH-HHHHHHCCHHHHHHHHHH-
T ss_conf --3276225278885201147888986456553464234435689899999971177405-767430332578888752-
Q ss_pred HHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHH--CCEEEE
Q ss_conf 642026776665432338679998445687675310358999999999642--013589
Q gi|254780606|r 511 STMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMAR--AAGIHL 567 (744)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~r--a~Gihl 567 (744)
T Consensus 256 ---------nsGHpGs--------------iTT~HA~s~~~Af~qla~l~k~s~~g~gL 291 (328)
T TIGR02788 256 ---------NSGHPGS--------------ITTVHAGSPEEAFEQLALLVKESQAGLGL 291 (328)
T ss_pred ---------CCCCCCC--------------EEEEEECCHHHHHHHHHHHHHCCHHHCCC
T ss_conf ---------0598860--------------56787189899999999987202543588