HHsearch alignment for GI: 254780606 and conserved domain: TIGR02788

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=97.85  E-value=6.5e-05  Score=52.70  Aligned_cols=213  Identities=22%  Similarity=0.274  Sum_probs=118.0

Q ss_pred             EEEEEEECCCC---CCHHHHHHHHHHHHHHH--C---------------CCCCEE-EEE-----CC-CCEEEEECCCCCC
Q ss_conf             58999754888---63999985999999871--4---------------776327-751-----89-8345442688888
Q gi|254780606|r  319 VTLYEFEPAPG---IKSSRVIGLADDIARSM--S---------------SLSARV-AVI-----PK-RNAIGIELPNETR  371 (744)
Q Consensus       319 ~~~~~~~~~~g---~~~~~~~~~~~d~~~~~--~---------------~~~~~~-~~~-----pg-~~~~~~~~p~~~~  371 (744)
T Consensus        29 ~~~~d~---P~rkaLT~~~l~~La~~~A~~~nt~q~is~y~~P~LSa~LP~G~RvQ~V~PPAc~~~eTvs~tIRKp--S~  103 (328)
T TIGR02788        29 TQRFDV---PERKALTFSHLRRLARAVASFSNTKQSISEYENPILSATLPGGERVQIVIPPACENDETVSITIRKP--SL  103 (328)
T ss_pred             EEEEEC---CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEECC--CC
T ss_conf             888726---7522441899999999988765378620102286378886999479998068758988589999526--44


Q ss_pred             CEEEHHHHHCCHHHCCCCCCEEEEEEE-CCCCCEEECCH------------H--HCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             707658751281211467836898420-57887321120------------1--14846997078753447999999999
Q gi|254780606|r  372 ETVYLRQIIESRSFSHSKANLALCLGK-TISGESVIADL------------A--NMPHILVAGTTGSGKSVAINTMIMSL  436 (744)
Q Consensus       372 ~~v~~~~~~~~~~~~~~~~~l~~~~g~-~~~g~~~~~dl------------~--~~PH~lvaG~TgsGKS~~l~~~i~sl  436 (744)
T Consensus       104 ~~~sL~dy~~~G~F~~ar~~-~~~~~~~~~d~~~~L~el~~~g~~~~Fl~~Ai~~~knIii~GGTgSGKTTf~kal~---  179 (328)
T TIGR02788       104 VDLSLDDYEEKGFFDTARAV-VVPASTELSDKDEELLELLDAGDIKEFLRLAIASRKNIIISGGTGSGKTTFLKALV---  179 (328)
T ss_pred             CCCCHHHHHHCCCCCEEEEE-ECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH---
T ss_conf             45547999627985447776-31443443468999999986288879999998738919999068971899999997---


Q ss_pred             HHHCCHHHEEEEEE-CCCCCEECCCCCCCCEEEEEE-EC---HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHH
Q ss_conf             98568011079997-234210001257752000044-44---178768999999866769999998077867999-9988
Q gi|254780606|r  437 LYRLRPDECRMIMV-DPKMLELSVYDGIPHLLTPVV-TN---PKKAVMALKWAVREMEERYRKMSHLSVRNIKSY-NERI  510 (744)
Q Consensus       437 ~~~~~p~~~~~~li-D~k~~~~~~~~~~ph~~~~v~-~~---~~~~~~~l~~~~~em~~r~~~~~~~~~~~i~~~-n~~~  510 (744)
T Consensus       180 --~~IP~~ER~iTIED~~E~~~~hhpN~V~L~ysk~v~~g~~~vt~~~Ll~scLRMrPDR-I~LgELRG~Eaf~F~~~~-  255 (328)
T TIGR02788       180 --KEIPKDERLITIEDTRELFLPHHPNKVHLFYSKGVGQGSAKVTPKDLLESCLRMRPDR-ILLGELRGDEAFDFIRAV-  255 (328)
T ss_pred             --HCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCH-HHHHHHCCHHHHHHHHHH-
T ss_conf             --3276225278885201147888986456553464234435689899999971177405-767430332578888752-


Q ss_pred             HHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHH--CCEEEE
Q ss_conf             642026776665432338679998445687675310358999999999642--013589
Q gi|254780606|r  511 STMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMAR--AAGIHL  567 (744)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~r--a~Gihl  567 (744)
T Consensus       256 ---------nsGHpGs--------------iTT~HA~s~~~Af~qla~l~k~s~~g~gL  291 (328)
T TIGR02788       256 ---------NSGHPGS--------------ITTVHAGSPEEAFEQLALLVKESQAGLGL  291 (328)
T ss_pred             ---------CCCCCCC--------------EEEEEECCHHHHHHHHHHHHHCCHHHCCC
T ss_conf             ---------0598860--------------56787189899999999987202543588