HHsearch alignment for GI: 254780606 and conserved domain: TIGR03375
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.75 E-value=0.038 Score=33.75 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=33.3
Q ss_pred EEECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECC
Q ss_conf 42057887321120----11484699707875344799999999998568011079997234210001
Q gi|254780606|r 396 LGKTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSV 459 (744)
Q Consensus 396 ~g~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~ 459 (744)
T Consensus 471 f~y~~~~~~vl~~vsl~i~~Ge~vaIvG~sGsGKSTL~kl-l~Gl-~~p~~G~i~idg~~~~~~~~~~ 536 (694)
T TIGR03375 471 FAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKL-LLGL-YQPTEGSVLLDGVDIRQIDPAD 536 (694)
T ss_pred EECCCCCCHHHCCHHHEECCCCEEEEEECCCCCHHHHHHH-HCCC-CCCCCCEEEECCEECCCCCHHH
T ss_conf 9879889222136311887997899980589878899998-5567-5899887998985425499999