HHsearch alignment for GI: 254780606 and conserved domain: TIGR03415
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.98 E-value=0.023 Score=35.16 Aligned_cols=163 Identities=15% Similarity=0.218 Sum_probs=83.7
Q ss_pred CEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE------CCC---------------CCEECCCC
Q ss_conf 732112011484699707875344799999999998568011079997------234---------------21000125
Q gi|254780606|r 403 ESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV------DPK---------------MLELSVYD 461 (744)
Q Consensus 403 ~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li------D~k---------------~~~~~~~~ 461 (744)
T Consensus 41 ~dvsl~I~~GEi~~lvGpSGsGKSTLLr~i-~GL~---~pt~G~I~i~~~~~~~d~~~~~~~~lr~~R~~~IgmVFQ~~a 116 (382)
T TIGR03415 41 ANASLDIEEGEICVLMGLSGSGKSSLLRAV-NGLN---PVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred ECCEEEECCCCEEEEECCCCCHHHHHHHHH-HCCC---CCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCC
T ss_conf 651748879989999999973499999999-7599---988529999268642245659989987630576699963786
Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHHHH------------HHHHHHCCCCCCCCCCCCCC
Q ss_conf 775200004444178768999999866769-99999807786799999------------88642026776665432338
Q gi|254780606|r 462 GIPHLLTPVVTNPKKAVMALKWAVREMEER-YRKMSHLSVRNIKSYNE------------RISTMYGEKPQGCGDDMRPM 528 (744)
Q Consensus 462 ~~ph~~~~v~~~~~~~~~~l~~~~~em~~r-~~~~~~~~~~~i~~~n~------------~~~~~~~~~~~~~~~~~~~~ 528 (744)
T Consensus 117 L~P~~T--V~eNia~~L~~~g~~~~e~~~rv~e~L~~VgL---~~~~~~yP~eLSGGqqQRVaIARA---------La~~ 182 (382)
T TIGR03415 117 LMPWLT--VEENVAFGLEMQGMPEAERRKRVDEQLELVGL---AQWADKKPGELSGGMQQRVGLARA---------FAMD 182 (382)
T ss_pred CCCCCC--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC---HHHHHCCHHHCCHHHHHHHHHHHH---------HHCC
T ss_conf 465681--99999899988699999999999999873598---465547955579889999999999---------8638
Q ss_pred CEEEEEHHH-HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEE
Q ss_conf 679998445-687675310358999999999642013589998516544441467885056305720
Q gi|254780606|r 529 PYIVIIVDE-MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQ 594 (744)
Q Consensus 529 p~ivvviDE-~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~ 594 (744)
T Consensus 183 P~iL-LmDEPfsaLD~~~r~~l---~~~l~~L~~~~~~TiifVTHD~~-EA~------~laDRIaVM 238 (382)
T TIGR03415 183 ADIL-LMDEPFSALDPLIRTQL---QDELLELQAKLNKTIIFVSHDLD-EAL------KIGNRIAIM 238 (382)
T ss_pred CCEE-EEECCCCCCCHHHHHHH---HHHHHHHHHHHCCEEEEECCCHH-HHH------HHCCEEEEE
T ss_conf 9989-97088765599999999---99999999986998999879999-999------868989999