HHsearch alignment for GI: 254780606 and conserved domain: TIGR03600
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.29 E-value=0.03 Score=34.37 Aligned_cols=151 Identities=16% Similarity=0.181 Sum_probs=74.8
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCC-------CCCCC--EEEEEEECHHHHHH
Q ss_conf 0114846997078753447999999999985680110799972342100012-------57752--00004444178768
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVY-------DGIPH--LLTPVVTNPKKAVM 479 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~-------~~~ph--~~~~v~~~~~~~~~ 479 (744)
T Consensus 191 l~~g~LiIiaARPsmGKTafalnia~n~A~~~---g~~Vl~fSLEMs~eql~~R~la~~s~i~~~~i~~g~l~~~~--~~ 265 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALRE---GKPVLFFSLEMSAEQLGERLLASKSGINTGNIRTGRFNDSD--FN 265 (421)
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHH--HH
T ss_conf 99886899985467874599999999999866---98389992579999999999998548977666528999899--99
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC-----HHHHHHHH
Q ss_conf 9999998667699999980778679999988642026776665432338679998445687675310-----35899999
Q gi|254780606|r 480 ALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG-----KEIEGAIQ 554 (744)
Q Consensus 480 ~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~-----~~~e~~~~ 554 (744)
T Consensus 266 ~~~~a~~~l~~~~l~i~d~~~~ti~~ir~~~r~~~~~~~--------~l--~livIDYLq-Li~~~~~~~r~~ei~~Isr 334 (421)
T TIGR03600 266 RLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKG--------GL--DLIVVDYIQ-LMAPTRGRDRNEELGGISR 334 (421)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCC--------CC--CEEEECHHH-HCCCCCCCCHHHHHHHHHH
T ss_conf 999999986168789966998876789999999998628--------98--699975786-5378888888999999999
Q ss_pred HHHHHHHCCEEEEEEEECCCC
Q ss_conf 999964201358999851654
Q gi|254780606|r 555 RLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 555 ~la~~~ra~GihlilatQrp~ 575 (744)
T Consensus 335 ~LK~lAkel~ipVi~lsQLnR 355 (421)
T TIGR03600 335 GLKALAKELDVPVVLLAQLNR 355 (421)
T ss_pred HHHHHHHHHCCCEEEECCCCC
T ss_conf 999999997997899705786