HHsearch alignment for GI: 254780606 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.

Probab=95.67  E-value=0.18  Score=29.07  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=21.3

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             6997078753447999999999985
Q gi|254780606|r  415 ILVAGTTGSGKSVAINTMIMSLLYR  439 (744)
Q Consensus       415 ~lvaG~TgsGKS~~l~~~i~sl~~~  439 (744)
T Consensus         2 tLi~G~pGsGKT~~a~qfl~~~a~~   26 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLAR   26 (187)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf             1587689999999999999999876