HHsearch alignment for GI: 254780606 and conserved domain: cd01125

>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

Probab=94.36  E-value=0.41  Score=26.61  Aligned_cols=45  Identities=11%  Similarity=0.304  Sum_probs=32.2

Q ss_pred             EEEEHHHHHHHHH---HCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf             9998445687675---31035899999999964201358999851654
Q gi|254780606|r  531 IVIIVDEMADLMM---VAGKEIEGAIQRLAQMARAAGIHLIMATQRPS  575 (744)
Q Consensus       531 ivvviDE~a~l~~---~~~~~~e~~~~~la~~~ra~GihlilatQrp~  575 (744)
T Consensus       113 ~LVViDpL~~~~~~dENd~~~m~~~i~~l~~ia~~tg~aVl~vHHt~K  160 (239)
T cd01125         113 DLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK  160 (239)
T ss_pred             CEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             899983817748999788999999999999999971999999706887