HHsearch alignment for GI: 254780606 and conserved domain: cd01126
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=95.62 E-value=0.021 Score=35.51 Aligned_cols=35 Identities=43% Similarity=0.674 Sum_probs=27.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC
Q ss_conf 46997078753447999999999985680110799972342
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM 454 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~ 454 (744)
T Consensus 1 H~lvig~tGsGKt~~~--vip~ll~-~-~~--s~vv~D~Kg 35 (384)
T cd01126 1 HVLVFAPTRSGKGVGF--VIPNLLT-W-PG--SVVVLDPKG 35 (384)
T ss_pred CEEEECCCCCCHHHHH--HHHHHHH-C-CC--CEEEEECCH
T ss_conf 9799889999731899--9999981-8-99--889994878