HHsearch alignment for GI: 254780606 and conserved domain: cd01127
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=98.94 E-value=9.4e-09 Score=79.04 Aligned_cols=104 Identities=20% Similarity=0.251 Sum_probs=62.3
Q ss_pred CEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCC--CC----CHHHHHHCCCCEEEEECCCHHHCC
Q ss_conf 679998445687675310358999999999642013589998516544--44----146788505630572036811100
Q gi|254780606|r 529 PYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSV--DV----ITGTIKANFPIRISFQVTSKIDSR 602 (744)
Q Consensus 529 p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~--~v----i~~~ik~n~~~ri~~~v~~~~dsr 602 (744)
T Consensus 270 ~rv~~~lDE~~~l~~-----l-~~~~~~l~~~R~~g~~~~~~~Q~~~Ql~~~YG~~~a~~i~~~~~~~i~~~~~d~~ta~ 343 (410)
T cd01127 270 RRLWFFIDELPSLHK-----L-PDLVDALAEGRKFGGCFVLGIQSYAQLEDIYGKKGAQTLASNLRTRIVLAAPDAKTAE 343 (410)
T ss_pred CCEEEEEECHHCCCC-----C-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCHHHHHHHHHCCCCEEEEECCCHHHHH
T ss_conf 607999887000377-----1-7799999988517978999917889999997873899998427768998279988999
Q ss_pred HHCCCCCHHHHCCCCCEEEE------------CCCC-CEEEEEECCCCHHHHHHH
Q ss_conf 32676316885689846864------------6898-438999343898899999
Q gi|254780606|r 603 TILGEHGAEQLLGRGDMLYM------------SGGG-RIQRVHGPLVSDIEIEKV 644 (744)
Q Consensus 603 ~il~~~gae~l~g~gd~l~~------------~~~~-~~~r~~~~~~~~~~~~~~ 644 (744)
T Consensus 344 ~~S------~~lG~~~v~~~~~s~s~g~~~~~~~~s~~~~~~~r~lv~p~Ei~~L 392 (410)
T cd01127 344 HAS------DSLGEQEVREMRENYSYGANNIRDGVSLGPQTEVQPLVTPSEIQAL 392 (410)
T ss_pred HHH------HHCCCEEEEEEEEEECCCCCCCCCCCEECCEEEEECCCCHHHHHCC
T ss_conf 999------9609669988750044787888898554311021327699999639