HHsearch alignment for GI: 254780606 and conserved domain: cd03115
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.45 E-value=0.54 Score=25.80 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=39.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCE----ECCCCCCCCEEEEEEECHHHHHHHHHHHH
Q ss_conf 699707875344799999999998568011079997234210----00125775200004444178768999999
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLE----LSVYDGIPHLLTPVVTNPKKAVMALKWAV 485 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~----~~~~~~~ph~~~~v~~~~~~~~~~l~~~~ 485 (744)
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~~--~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~ 75 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLK--KKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAI 75 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--HCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
T ss_conf 99989999988999999999999--76992899974887577999999999974985992277558799999999