HHsearch alignment for GI: 254780606 and conserved domain: cd03220
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.00 E-value=0.24 Score=28.25 Aligned_cols=44 Identities=23% Similarity=0.401 Sum_probs=30.7
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 2112011484699707875344799999999998568011079997234
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
T Consensus 41 isf~i~~GeivgilG~NGaGKSTLl~-~i~Gl~---~p~~G~I-~i~G~ 84 (224)
T cd03220 41 VSFEVPRGERIGLIGRNGAGKSTLLR-LLAGIY---PPDSGTV-TVRGR 84 (224)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHH-HHHCCC---CCCCCEE-EECCE
T ss_conf 07898389899999799981999999-997587---7787769-99989