HHsearch alignment for GI: 254780606 and conserved domain: cd03225

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.17  E-value=0.13  Score=30.02  Aligned_cols=153  Identities=20%  Similarity=0.329  Sum_probs=67.4

Q ss_pred             EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE--ECCCCCEEC--------CCCCCCC-EEEE-EEE
Q ss_conf             211201148469970787534479999999999856801107999--723421000--------1257752-0000-444
Q gi|254780606|r  405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM--VDPKMLELS--------VYDGIPH-LLTP-VVT  472 (744)
Q Consensus       405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l--iD~k~~~~~--------~~~~~ph-~~~~-v~~  472 (744)
T Consensus        20 vsl~i~~Gei~~iiG~nGaGKSTLlk~i-~Gl~---~p~~G~I~~~g~~i~~~~~~~~~~~ig~v~Q~p~~~~~~~tv~e   95 (211)
T cd03225          20 ISLTIKKGEFVLIVGPNGSGKSTLLRLL-NGLL---GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEE   95 (211)
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHH-HCCC---CCCCCCEEECCEECCCCCHHHHHCCEEEEEECCHHHCCCCCHHH
T ss_conf             1788849979999889999899999999-6467---79888778999999979989984038999778325305586999


Q ss_pred             CHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHH---------HHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHH-H
Q ss_conf             4178768999999866769-999998077867999---------9988642026776665432338679998445687-6
Q gi|254780606|r  473 NPKKAVMALKWAVREMEER-YRKMSHLSVRNIKSY---------NERISTMYGEKPQGCGDDMRPMPYIVIIVDEMAD-L  541 (744)
Q Consensus       473 ~~~~~~~~l~~~~~em~~r-~~~~~~~~~~~i~~~---------n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~-l  541 (744)
T Consensus        96 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGqkQrv~iAral---------~~~P~-ililDEPTsgL  165 (211)
T cd03225          96 EVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVL---------AMDPD-ILLLDEPTAGL  165 (211)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH---------HCCCC-EEEEECCCCCC
T ss_conf             999999986999999999999999986994666389545999899999999999---------75999-99997985558


Q ss_pred             HHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf             7531035899999999964201358999851654
Q gi|254780606|r  542 MMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS  575 (744)
Q Consensus       542 ~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~  575 (744)
T Consensus       166 D~~~~~~i~~~l~~l~~----~g~tii~itHdl~  195 (211)
T cd03225         166 DPAGRRELLELLKKLKA----EGKTIIIVTHDLD  195 (211)
T ss_pred             CHHHHHHHHHHHHHHHH----CCCEEEEEECCHH
T ss_conf             99999999999999997----8999999925999