HHsearch alignment for GI: 254780606 and conserved domain: cd03225
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.17 E-value=0.13 Score=30.02 Aligned_cols=153 Identities=20% Similarity=0.329 Sum_probs=67.4
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE--ECCCCCEEC--------CCCCCCC-EEEE-EEE
Q ss_conf 211201148469970787534479999999999856801107999--723421000--------1257752-0000-444
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM--VDPKMLELS--------VYDGIPH-LLTP-VVT 472 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l--iD~k~~~~~--------~~~~~ph-~~~~-v~~ 472 (744)
T Consensus 20 vsl~i~~Gei~~iiG~nGaGKSTLlk~i-~Gl~---~p~~G~I~~~g~~i~~~~~~~~~~~ig~v~Q~p~~~~~~~tv~e 95 (211)
T cd03225 20 ISLTIKKGEFVLIVGPNGSGKSTLLRLL-NGLL---GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEE 95 (211)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHH-HCCC---CCCCCCEEECCEECCCCCHHHHHCCEEEEEECCHHHCCCCCHHH
T ss_conf 1788849979999889999899999999-6467---79888778999999979989984038999778325305586999
Q ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHH---------HHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHH-H
Q ss_conf 4178768999999866769-999998077867999---------9988642026776665432338679998445687-6
Q gi|254780606|r 473 NPKKAVMALKWAVREMEER-YRKMSHLSVRNIKSY---------NERISTMYGEKPQGCGDDMRPMPYIVIIVDEMAD-L 541 (744)
Q Consensus 473 ~~~~~~~~l~~~~~em~~r-~~~~~~~~~~~i~~~---------n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~-l 541 (744)
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGqkQrv~iAral---------~~~P~-ililDEPTsgL 165 (211)
T cd03225 96 EVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVL---------AMDPD-ILLLDEPTAGL 165 (211)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH---------HCCCC-EEEEECCCCCC
T ss_conf 999999986999999999999999986994666389545999899999999999---------75999-99997985558
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 7531035899999999964201358999851654
Q gi|254780606|r 542 MMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 542 ~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
T Consensus 166 D~~~~~~i~~~l~~l~~----~g~tii~itHdl~ 195 (211)
T cd03225 166 DPAGRRELLELLKKLKA----EGKTIIIVTHDLD 195 (211)
T ss_pred CHHHHHHHHHHHHHHHH----CCCEEEEEECCHH
T ss_conf 99999999999999997----8999999925999