>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=93.55 E-value=0.25 Score=28.15 Aligned_cols=127 Identities=20% Similarity=0.314 Sum_probs=63.0 Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC---------------CCEECCCCCCCCEEEEE Q ss_conf 112011484699707875344799999999998568011079997234---------------21000125775200004 Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK---------------MLELSVYDGIPHLLTPV 470 (744) Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k---------------~~~~~~~~~~ph~~~~v 470 (744) T Consensus 20 s~~i~~Ge~~~ivGpSG~GKSTllr~-i~Gl~---~p~~G~I~~~g~~i~~~~~~~~~~rr~ig~vFQ~~~L~p~~t--v 93 (178) T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRC-IAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLT--V 93 (178) T ss_pred EEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEECCEECCCCCCHHHHHCCCEEEEECCCCCCCCCC--H T ss_conf 76988998999999999839999999-98599---999639999999998886102454177599926998899892--8 Q ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHH-HHHHHHHCCHHH Q ss_conf 4441787689999998667699999980778679999988642026776665432338679998445-687675310358 Q gi|254780606|r 471 VTNPKKAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDE-MADLMMVAGKEI 549 (744) Q Consensus 471 ~~~~~~~~~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE-~a~l~~~~~~~~ 549 (744) T Consensus 94 ~eNv---~~~---LSGGq~QRvaIA------------------RAL~---------~~P~il-l~DEPts~LD~~~~~~i 139 (178) T cd03229 94 LENI---ALG---LSGGQQQRVALA------------------RALA---------MDPDVL-LLDEPTSALDPITRREV 139 (178) T ss_pred HHHH---CEE---CCCHHHHHHHHH------------------HHHH---------CCCCEE-EEECCCCCCCHHHHHHH T ss_conf 9960---081---772688999999------------------9985---------299999-97089764799999999 Q ss_pred HHHHHHHHHHHHCCEEEEEEEECCCC Q ss_conf 99999999964201358999851654 Q gi|254780606|r 550 EGAIQRLAQMARAAGIHLIMATQRPS 575 (744) Q Consensus 550 e~~~~~la~~~ra~GihlilatQrp~ 575 (744) T Consensus 140 ~~~---l~~l~~~~~~t~i~vTHd~~ 162 (178) T cd03229 140 RAL---LKSLQAQLGITVVLVTHDLD 162 (178) T ss_pred HHH---HHHHHHHHCCEEEEECCCHH T ss_conf 999---99999964999999989999

HHsearch alignment for GI: 254780606 and conserved domain: cd03229