HHsearch alignment for GI: 254780606 and conserved domain: cd03232
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.94 E-value=0.26 Score=27.96 Aligned_cols=32 Identities=13% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCEEECCH----HHCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 87321120----114846997078753447999999
Q gi|254780606|r 402 GESVIADL----ANMPHILVAGTTGSGKSVAINTMI 433 (744)
Q Consensus 402 g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i 433 (744)
T Consensus 19 ~~~vL~~is~~i~~Ge~~~llGpnGaGKSTLl~~l~ 54 (192)
T cd03232 19 KRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred CEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHH
T ss_conf 679998838899288399999999998899999983