HHsearch alignment for GI: 254780606 and conserved domain: cd03241
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.71 E-value=0.17 Score=29.26 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=23.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHE
Q ss_conf 46997078753447999999999985680110
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDEC 445 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~ 445 (744)
T Consensus 23 lnVlTGETGAGKSIlidAL~lllG~Ra~~~~I 54 (276)
T cd03241 23 LTVLTGETGAGKSILLDALSLLLGGRASADLI 54 (276)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 75887899888999999999962899884533