HHsearch alignment for GI: 254780606 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.91 E-value=0.023 Score=35.22 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=22.8
Q ss_pred CCHHHCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 1201148469970787534479999999999
Q gi|254780606|r 407 ADLANMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 407 ~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
T Consensus 35 ~~i~~Ge~vaIvG~sGsGKSTL~~l-l~gl~ 64 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVAL-LENFY 64 (226)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHH-HHCCC
T ss_conf 9982999999999999849999999-96454