HHsearch alignment for GI: 254780606 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.93 E-value=0.087 Score=31.25 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=33.0
Q ss_pred EECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCE
Q ss_conf 2057887321120----11484699707875344799999999998568011079997234210
Q gi|254780606|r 397 GKTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLE 456 (744)
Q Consensus 397 g~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~ 456 (744)
T Consensus 9 ~Y~~~~~~vL~ninl~i~~Ge~i~IvG~sGsGKSTLl~l-l~gl~-~p~~G~I~i~g~~i~~~~ 70 (234)
T cd03251 9 RYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNL-IPRFY-DVDSGRILIDGHDVRDYT 70 (234)
T ss_pred EECCCCCCCEECEEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC-CCCCCEEEECCEECCCCC
T ss_conf 969899673536089987999999998999829999999-96676-678868999999966089