HHsearch alignment for GI: 254780606 and conserved domain: cd03252
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.81 E-value=0.047 Score=33.05 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=32.0
Q ss_pred ECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCE
Q ss_conf 057887321120----11484699707875344799999999998568011079997234210
Q gi|254780606|r 398 KTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLE 456 (744)
Q Consensus 398 ~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~ 456 (744)
T Consensus 10 Y~~~~~~~L~~is~~i~~G~~vaivG~sGsGKSTll~l-l~gl-~~p~~G~I~i~g~di~~~~ 70 (237)
T cd03252 10 YKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKL-IQRF-YVPENGRVLVDGHDLALAD 70 (237)
T ss_pred ECCCCCCCEECCEEEECCCCEEEEECCCCCHHHHHHHH-HHCC-CCCCCCEEEECCEECCCCC
T ss_conf 79899572515089987999999999999859999999-9677-6579878999999955189